RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MYEOVQ96EZ4 313 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 VCPIP1Q96JH7 1222 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 CFAP57Q96MR6 1250 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 PHOX2BQ99453 314 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 SEMA4AQ9H3S1 761 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 TAS2R14Q9NYV8 317 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 R4GN57 208 aa15.57■□□□□ 0.08
CPSF1-208ENST00000532560 SIGLEC16A6NMB1 481 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 SGK1O00141 431 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 DDX3XO00571 662 aaKnown RBP eCLIP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 ADAM23O75077 832 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 PAGE1O75459 146 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 ENDOD1O94919 500 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 APBB3O95704 486 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 SERPING1P05155 500 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 SKILP12757 684 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 HNRNPLP14866 589 aaKnown RBP eCLIP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 PDGFRAP16234 1089 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 HOXD11P31277 338 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 SDC4P31431 198 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 CASP14P31944 242 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 TDRD12Q587J7 1177 aaKnown RBP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 ACBD5Q5T8D3 534 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 TTC39BQ5VTQ0 682 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 EGFLAMQ63HQ2 1017 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 KIAA0907Q7Z7F0 614 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 PHLDB2Q86SQ0 1253 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 WDR5BQ86VZ2 330 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 LONP2Q86WA8 852 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 VSTM4Q8IW00 320 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 MFN1Q8IWA4 741 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 CCDC33Q8N5R6 958 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 JOSD2Q8TAC2 188 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 CPLX3Q8WVH0 158 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 RXFP2Q8WXD0 754 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 ATRIPQ8WXE1 791 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 HHIPQ96QV1 700 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 SELENOOQ9BVL4 669 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 WDCPQ9H6R7 721 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 POLR3BQ9NW08 1133 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-208ENST00000532560 GGA2Q9UJY4 613 aa15.56■□□□□ 0.08
CPSF1-208ENST00000532560 NPC1O15118 1278 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 LUC7L3O95232 432 aaKnown RBP15.55■□□□□ 0.08
CPSF1-208ENST00000532560 GJB6O95452 261 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 ADCY5O95622 1261 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 PABPC1P11940 636 aaKnown RBP15.55■□□□□ 0.08
CPSF1-208ENST00000532560 RRM1P23921 792 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 NTSR1P30989 418 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 HNRNPH3P31942 346 aaKnown RBP15.55■□□□□ 0.08
CPSF1-208ENST00000532560 FNTBP49356 437 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 DGKEP52429 567 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 ATP11AP98196 1134 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 DMWDQ09019 674 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 CDH18Q13634 790 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 E2F5Q15329 346 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 CRY1Q16526 586 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 RABGAP1LQ5R372 815 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 PPP1R15BQ5SWA1 713 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 AHI1Q8N157 1196 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 TSTD1Q8NFU3 115 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 FIBINQ8TAL6 211 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 WFDC5Q8TCV5 224 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 UCMAQ8WVF2 138 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 GABRG3Q99928 467 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 TKTL2Q9H0I9 626 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 ABCB8Q9NUT2 735 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 STIM2Q9P246 746 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 EBF1Q9UH73 591 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 HS3ST4Q9Y661 456 aa15.55■□□□□ 0.08
CPSF1-208ENST00000532560 MYO18AQ92614 2054 aaKnown RBP15.55■□□□□ 0.08
CPSF1-208ENST00000532560 ANKRD62A6NC57 917 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 TMCO5BA8MYB1 307 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 I6L893 689 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 TIMM44O43615 452 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 GPD1P21695 349 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 HOXC13P31276 330 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 RFC1P35251 1148 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 ATXN1P54253 815 aaKnown RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 AUHQ13825 339 aaKnown RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 ARID5BQ14865 1188 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 C15orf59Q2T9L4 293 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 CCDC14Q49A88 953 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 TMEM215Q68D42 235 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 HEATR6Q6AI08 1181 aaKnown RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 FBXL22Q6P050 247 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 TMEM92Q6UXU6 159 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 CHST9Q7L1S5 443 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 STRADAQ7RTN6 431 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 VPS36Q86VN1 386 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 RASSF3Q86WH2 238 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 CCDC117Q8IWD4 279 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 CFAP52Q8N1V2 620 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 CENPIQ92674 756 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 NKD2Q969F2 451 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-208ENST00000532560 TRIM11Q96F44 468 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 LMLNQ96KR4 655 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 MCEEQ96PE7 176 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 ACOX2Q99424 681 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 DNAJC7Q99615 494 aa15.54■□□□□ 0.08
CPSF1-208ENST00000532560 EPC1Q9H2F5 836 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms