RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 SUN2Q9UH99 717 aa6.85□□□□□ -1.31
CD44-221ENST00000526000 SLCO3A1Q9UIG8 710 aa6.85□□□□□ -1.31
CD44-221ENST00000526000 TSPAN16Q9UKR8 245 aa6.85□□□□□ -1.31
CD44-221ENST00000526000 NCKAP1Q9Y2A7 1128 aa6.85□□□□□ -1.31
CD44-221ENST00000526000 PCDHGB2Q9Y5G2 931 aa6.85□□□□□ -1.31
CD44-221ENST00000526000 MYH10P35580 1976 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3DA0A087WVF3 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3IA0A087WXS9 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3EA0A087X179 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3KA0A087X1G2 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 A0A1B0GTQ1 180 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3FA6NER0 549 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3LB9A6J9 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ENC1O14682 589 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 NPC1O15118 1278 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TLX3O43711 291 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 RNASEH2AO75792 299 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 GABBR2O75899 941 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 MOCS2O96007 188 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 IGLV3-19P01714 112 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 IGHV4-34P06331 123 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ATP5BP06576 529 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 DLDP09622 509 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3HP0C7X1 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ABCB4P21439 1286 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 MAT2AP31153 395 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 SLC8A1P32418 973 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CSKP41240 450 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CTSKP43235 329 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 SYKP43405 635 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 PSMD8P48556 350 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CCT8P50990 548 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 NDUFA8P51970 172 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ZNF132P52740 706 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 BCAT1P54687 386 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBX4P57082 545 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 SLC8A3P57103 927 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ST8SIA6P61647 398 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TARDBPQ13148 414 aaKnown RBP eCLIP6.84□□□□□ -1.31
CD44-221ENST00000526000 EIF4HQ15056 248 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 SHBQ15464 509 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 POM121L1PQ3SYA9 428 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CBWD6Q4V339 395 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 SGO2Q562F6 1265 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 DCAF17Q5H9S7 520 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 FSCBQ5H9T9 825 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 RAB41Q5JT25 222 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CBWD3Q5JTY5 395 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CBWD5Q5RIA9 395 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ADGRF1Q5T601 910 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 PIK3R6Q5UE93 754 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ZNF776Q68DI1 518 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 ARHGAP17Q68EM7 881 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3GQ6DHY5 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 PM20D1Q6GTS8 502 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ISM2Q6H9L7 571 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3CQ6IPX1 549 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 INTS8Q75QN2 995 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 BHLHA9Q7RTU4 235 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TBC1D3Q8IZP1 549 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 SIX6OS1Q8N1H7 587 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 STK40Q8N2I9 435 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 GALNT15Q8N3T1 639 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ZNF276Q8N554 614 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 OR14C36Q8NHC7 312 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ADAM32Q8TC27 787 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 WFIKKN2Q8TEU8 576 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CLEC4CQ8WTT0 213 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TFAP2BQ92481 460 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 KLK6Q92876 244 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 IGSF8Q969P0 613 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CCDC47Q96A33 483 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 CCDC34Q96HJ3 373 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ORAI3Q9BRQ5 295 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 ACE2Q9BYF1 805 aaPredicted RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 UBXN6Q9BZV1 441 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 DNAI2Q9GZS0 605 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 PABPC3Q9H361 631 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 SGK2Q9HBY8 427 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 PNPLA8Q9NP80 782 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 HESX1Q9UBX0 185 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 USP25Q9UHP3 1055 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 INTS6Q9UL03 887 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 TRAF3IP3Q9Y228 551 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CA5BQ9Y2D0 317 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 HBS1LQ9Y450 684 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 NFE2L3Q9Y4A8 694 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 CEP83Q9Y592 693 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 PCDHB4Q9Y5E5 795 aa6.84□□□□□ -1.31
CD44-221ENST00000526000 TNRC6BQ9UPQ9 1833 aaKnown RBP6.84□□□□□ -1.31
CD44-221ENST00000526000 FAM237AA0A1B0GTK4 181 aa6.83□□□□□ -1.32
CD44-221ENST00000526000 GOLGA6L4A6NEF3 574 aa6.83□□□□□ -1.32
CD44-221ENST00000526000 RNF225M0QZC1 329 aaPredicted RBP6.83□□□□□ -1.32
CD44-221ENST00000526000 XPO1O14980 1071 aaKnown RBP6.83□□□□□ -1.32
CD44-221ENST00000526000 BNIP3LO60238 219 aa6.83□□□□□ -1.32
CD44-221ENST00000526000 ACSL4O60488 711 aa6.83□□□□□ -1.32
CD44-221ENST00000526000 RNASEH1O60930 286 aaKnown RBP6.83□□□□□ -1.32
CD44-221ENST00000526000 SDC3O75056 442 aa6.83□□□□□ -1.32
CD44-221ENST00000526000 MYF5P13349 255 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms