RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 PPP1R26Q5T8A7 1209 aaPredicted RBP12.13□□□□□ -0.47
SDCBP-211ENST00000523441 RFWD3Q6PCD5 774 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 FOXR1Q6PIV2 292 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 CCDC186Q7Z3E2 898 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 AHI1Q8N157 1196 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 CPXM2Q8N436 756 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 OR14C36Q8NHC7 312 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 WFIKKN2Q8TEU8 576 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 PARD3BQ8TEW8 1205 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 KCNE4Q8WWG9 221 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 EDEM1Q92611 657 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 CDK5RAP1Q96SZ6 601 aaKnown RBP12.13□□□□□ -0.47
SDCBP-211ENST00000523441 MYOCQ99972 504 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 NT5C1AQ9BXI3 368 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 CAAP1Q9H8G2 361 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 VRTNQ9H8Y1 702 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 TFIP11Q9UBB9 837 aaKnown RBP12.13□□□□□ -0.47
SDCBP-211ENST00000523441 SUN2Q9UH99 717 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 CEP83Q9Y592 693 aa12.13□□□□□ -0.47
SDCBP-211ENST00000523441 COL6A6A6NMZ7 2263 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3DA0A087WVF3 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3IA0A087WXS9 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3EA0A087X179 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3KA0A087X1G2 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3FA6NER0 549 aaPredicted RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3LB9A6J9 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TLR4O00206 839 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 FFAR2O15552 330 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 MSI1O43347 362 aaKnown RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 RNASEH1O60930 286 aaKnown RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 USP12O75317 370 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 ATP5BP06576 529 aaKnown RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 NEFLP07196 543 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 DLDP09622 509 aaKnown RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3HP0C7X1 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 CDK4P11802 303 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 C6P13671 934 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 ST8SIA6P61647 398 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 RHDQ02161 417 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 ZBTB16Q05516 673 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 CST6Q15828 149 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 CEP135Q66GS9 1140 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3GQ6DHY5 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3CQ6IPX1 549 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 UNC93AQ86WB7 457 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TBC1D3Q8IZP1 549 aaPredicted RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TSC1Q92574 1164 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 GOLGA1Q92805 767 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 PLD4Q96BZ4 506 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 HEXIM2Q96MH2 286 aaKnown RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 USP28Q96RU2 1077 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 DUSP16Q9BY84 665 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 LRRC27Q9C0I9 530 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 TNMDQ9H2S6 317 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 CLIC5Q9NZA1 410 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 CA5BQ9Y2D0 317 aa12.12□□□□□ -0.47
SDCBP-211ENST00000523441 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.12□□□□□ -0.47
SDCBP-211ENST00000523441 SIGLEC6O43699 453 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 WISP1O95388 367 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 CENPBP07199 599 aaPredicted RBP12.11□□□□□ -0.47
SDCBP-211ENST00000523441 SLC8A1P32418 973 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 AFMP43652 599 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 TKTL1P51854 596 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 AP3M2P53677 418 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 NXPH1P58417 271 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 PPP2CBP62714 309 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 PPP2CAP67775 309 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 STK38Q15208 465 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 SLC45A4Q5BKX6 768 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.11□□□□□ -0.47
SDCBP-211ENST00000523441 SPATS2Q86XZ4 545 aaKnown RBP12.11□□□□□ -0.47
SDCBP-211ENST00000523441 CARNMT1Q8N4J0 409 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 OR2T34Q8NGX1 318 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 RNF139Q8WU17 664 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 ULBP1Q9BZM6 244 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 RSPH9Q9H1X1 276 aaPredicted RBP12.11□□□□□ -0.47
SDCBP-211ENST00000523441 ADAMTS1Q9UHI8 967 aa12.11□□□□□ -0.47
SDCBP-211ENST00000523441 ARID1BQ8NFD5 2236 aaPredicted RBP12.1□□□□□ -0.47
SDCBP-211ENST00000523441 A0A1W2PR77 199 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 TTC34A8MYJ7 566 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 PIK3R2O00459 728 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 TRIM38O00635 465 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 ASS1P00966 412 aaKnown RBP12.1□□□□□ -0.47
SDCBP-211ENST00000523441 CTSOP43234 321 aaPredicted RBP12.1□□□□□ -0.47
SDCBP-211ENST00000523441 NFKB2Q00653 900 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 AMPD3Q01432 767 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 SFSWAPQ12872 951 aaKnown RBP12.1□□□□□ -0.47
SDCBP-211ENST00000523441 NFATC3Q12968 1075 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 KNOP1Q1ED39 458 aaKnown RBP12.1□□□□□ -0.47
SDCBP-211ENST00000523441 KMT5BQ4FZB7 885 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 C6orf132Q5T0Z8 1188 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 MMS22LQ6ZRQ5 1243 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 USP30Q70CQ3 517 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 SV2AQ7L0J3 742 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 PIGZQ86VD9 579 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 MFN1Q8IWA4 741 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 ARHGAP18Q8N392 663 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 DCBLD1Q8N8Z6 715 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 IMPG2Q9BZV3 1241 aa12.1□□□□□ -0.47
SDCBP-211ENST00000523441 FBRSQ9HAH7 460 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms