RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 FLOT1O75955 427 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 PCP11498 1178 aaKnown RBP7.88□□□□□ -1.15
SDCBP-208ENST00000520228 CYP2C9P11712 490 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 ZKSCAN1P17029 563 aaPredicted RBP7.88□□□□□ -1.15
SDCBP-208ENST00000520228 CTGFP29279 349 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 NPTX2P47972 431 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 PRMT2P55345 433 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 KLRC3Q07444 240 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 DAG1Q14118 895 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 SLC44A4Q53GD3 710 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 LY6G5CQ5SRR4 150 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 DCAF12L1Q5VU92 463 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 KCNV1Q6PIU1 500 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 GGNQ86UU5 652 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 Q8N1X5 172 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 SNX19Q92543 992 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 MOGAT1Q96PD6 335 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 OSBPL9Q96SU4 736 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 PAGR1Q9BTK6 254 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 TTYH3Q9C0H2 523 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 SERHL2Q9H4I8 314 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 TXNRD2Q9NNW7 524 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 STX8Q9UNK0 236 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 REXO2Q9Y3B8 237 aaKnown RBP7.88□□□□□ -1.15
SDCBP-208ENST00000520228 RABGAP1Q9Y3P9 1069 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 AK9Q5TCS8 1911 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 PLIN4Q96Q06 1357 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 PYCARD-AS1I3L0S3 204 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 MYO1CO00159 1063 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 NMT2O60551 498 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 NDUFB10O96000 172 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 MYL3P08590 195 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 XRCC6P12956 609 aaKnown RBP eCLIP7.87□□□□□ -1.15
SDCBP-208ENST00000520228 MAKP20794 623 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 NDUFV1P49821 464 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 LOXL3P58215 753 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 CCNA1P78396 465 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 PRKCZQ05513 592 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 PUM1Q14671 1186 aaKnown RBP eCLIP7.87□□□□□ -1.15
SDCBP-208ENST00000520228 FAM83BQ5T0W9 1011 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 SYCP2LQ5T4T6 812 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 CASC1Q6TDU7 716 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 TBC1D10CQ8IV04 446 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 LNX2Q8N448 690 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 RNF152Q8N8N0 203 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 RAET1EQ8TD07 263 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 ESR2Q92731 530 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 ZC3H10Q96K80 434 aaKnown RBP7.87□□□□□ -1.15
SDCBP-208ENST00000520228 KRTAP9-3Q9BYQ3 159 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 IL17RBQ9NRM6 502 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 INTS13Q9NVM9 706 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 SNX13Q9Y5W8 968 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 SIPA1L1O43166 1804 aa7.87□□□□□ -1.15
SDCBP-208ENST00000520228 DDX60LQ5H9U9 1706 aaKnown RBP7.86□□□□□ -1.15
SDCBP-208ENST00000520228 COL4A3Q01955 1670 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 TRGV11A0A075B6L2 103 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 KPNA5O15131 536 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 CNMDO75829 334 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 ZNF202O95125 648 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 IL18RAPO95256 599 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 ITGALP20701 1170 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 KLRC1P26715 233 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 MAPK4P31152 587 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 NT5C2P49902 561 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 LILRA4P59901 499 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 SLC9C1Q4G0N8 1177 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 ABHD17BQ5VST6 288 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 TMEM108Q6UXF1 575 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 MPP5Q8N3R9 675 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 GMCL1P1Q8NEA9 526 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 PARD3BQ8TEW8 1205 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 WDR11Q9BZH6 1224 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 KRT23Q9C075 422 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 MS4A7Q9GZW8 240 aaPredicted RBP7.86□□□□□ -1.15
SDCBP-208ENST00000520228 XPNPEP3Q9NQH7 507 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 TCP11L1Q9NUJ3 509 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 FBXO28Q9NVF7 368 aa7.86□□□□□ -1.15
SDCBP-208ENST00000520228 DOCK1Q14185 1865 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 NEDD4P46934 1319 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 A0A0B4J269 797 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 TOP1P11387 765 aaKnown RBP7.85□□□□□ -1.15
SDCBP-208ENST00000520228 TSHRP16473 764 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 MCCP23508 829 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 SLC1A4P43007 532 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 NOVP48745 357 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 AK2P54819 239 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 TRDNQ13061 729 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 TUBB3Q13509 450 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 ZIK1Q3SY52 487 aaPredicted RBP7.85□□□□□ -1.15
SDCBP-208ENST00000520228 PREPLQ4J6C6 727 aaPredicted RBP7.85□□□□□ -1.15
SDCBP-208ENST00000520228 WDR78Q5VTH9 848 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 ZDHHC24Q6UX98 284 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 DPP9Q86TI2 863 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 IQCA1Q86XH1 822 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 ZNF280BQ86YH2 543 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 MAP4K1Q92918 833 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 TTC14Q96N46 770 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 SLF1Q9BQI6 1058 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 AMBRA1Q9C0C7 1298 aa7.85□□□□□ -1.15
SDCBP-208ENST00000520228 SPATC1LQ9H0A9 340 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms