RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 NCKIPSDQ9NZQ3 722 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CCDC167Q9P0B6 97 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SOX13Q9UN79 622 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 MYH8P13535 1937 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ADGRA3Q8IWK6 1321 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 RPTORQ8N122 1335 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CBX4O00257 560 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 LYPLA1O75608 230 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 PTPN1P18031 435 aaKnown RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 LHX1P48742 406 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 PCYT1AP49585 367 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ARHGDIAP52565 204 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 MFSD10Q14728 455 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SPDYCQ5MJ68 293 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 TXNRD3NBQ6F5E7 133 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CYP2R1Q6VVX0 501 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 FITM2Q8N6M3 262 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 C1orf127Q8N9H9 656 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ZNF516Q92618 1163 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 INPP5DQ92835 1189 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 MBOAT7Q96N66 472 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 NFASCO94856 1347 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 GPR182O15218 404 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 MSX2P35548 267 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 PTGIRP43119 386 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 POU4F1Q01851 419 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 SH3PXD2AQ5TCZ1 1133 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 MARC1Q5VT66 337 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 STK32AQ8WU08 396 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 DACT3Q96B18 629 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 DHX33Q9H6R0 707 aaKnown RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 CACYBPQ9HB71 228 aaKnown RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 BTBD7Q9P203 1132 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 LMO7Q8WWI1 1683 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ATP4AP20648 1035 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ATN1P54259 1190 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 CDH17Q12864 832 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 PTK2BQ14289 1009 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 BNC2Q6ZN30 1099 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ALYREFQ86V81 257 aaKnown RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 SNX32Q86XE0 403 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 CCT7Q99832 543 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 TRIM54Q9BYV2 358 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 NSMCE4AQ9NXX6 385 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 PLA2G4CQ9UP65 541 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 PAPSS1O43252 624 aaPredicted RBP11.97□□□□□ -0.49
SYNPO-204ENST00000519664 KRT36O76013 467 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 PYGLP06737 847 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ITGB6P18564 788 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 NNMTP40261 264 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 PEX5P50542 639 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 NCALDP61601 193 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 STX5Q13190 355 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 KRT33BQ14525 404 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 INPP5AQ14642 412 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ARHGEF6Q15052 776 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 SDHAF4Q5VUM1 108 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 TMEM192Q8IY95 271 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ITFG2Q969R8 447 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 CDRT15Q96T59 188 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 ELOVL4Q9GZR5 314 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 POPDC2Q9HBU9 364 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 SNX5Q9Y5X3 404 aa11.97□□□□□ -0.49
SYNPO-204ENST00000519664 STRNO43815 780 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 PIGNO95427 931 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 PIRTP0C851 137 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 ERCC2P18074 760 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 RABGGTBP53611 331 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 RTP1P59025 263 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 MAPRE1Q15691 268 aaKnown RBP11.96□□□□□ -0.49
SYNPO-204ENST00000519664 FNBP1LQ5T0N5 605 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 MRNIPQ6NTE8 343 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 ZDHHC24Q6UX98 284 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 WNT8BQ93098 351 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 ZFP42Q96MM3 310 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 TINF2Q9BSI4 451 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 THUMPD3Q9BV44 507 aaKnown RBP11.96□□□□□ -0.49
SYNPO-204ENST00000519664 NMRAL1Q9HBL8 299 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 TUBGCP4Q9UGJ1 667 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 APPL1Q9UKG1 709 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 STARD13Q9Y3M8 1113 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 NR5A2O00482 541 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 SHOX2O60902 331 aaPredicted RBP11.96□□□□□ -0.49
SYNPO-204ENST00000519664 SMNDC1O75940 238 aaKnown RBP eCLIP11.96□□□□□ -0.49
SYNPO-204ENST00000519664 BAIAP3O94812 1187 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 RGS2P41220 211 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 RAD51Q06609 339 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 FSTL1Q12841 308 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 ACAP1Q15027 740 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 PIWIL2Q8TC59 973 aaKnown RBP11.96□□□□□ -0.49
SYNPO-204ENST00000519664 CPT1BQ92523 772 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 CINPQ9BW66 212 aaPredicted RBP11.96□□□□□ -0.49
SYNPO-204ENST00000519664 VTA1Q9NP79 307 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 XPNPEP3Q9NQH7 507 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 PLIN4Q96Q06 1357 aa11.96□□□□□ -0.49
SYNPO-204ENST00000519664 A0A0A0MRY4 1105 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 EME2A4GXA9 379 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 H0Y626 953 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 PLA2G6O60733 806 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms