RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 FREM2Q5SZK8 3169 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 CYP2D7A0A087X1C5 515 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 GOLGA6L4A6NEF3 574 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 SRRM3A6NNA2 597 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 KBTBD13C9JR72 458 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 KIAA0355O15063 1070 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 POLR3GO15318 223 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 ULK1O75385 1050 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 FLOT1O75955 427 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 PGK1P00558 417 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 LMNAP02545 664 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 PGK2P07205 417 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 CA3P07451 260 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 CLTBP09497 229 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ARP10275 920 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 FCER1AP12319 257 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 EEF2P13639 858 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 HK1P19367 917 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 CCT8P50990 548 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 PAPOLAP51003 745 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 CSE1LP55060 971 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 MANFP55145 182 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 WNT3AP56704 352 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ARPC4P59998 168 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 DUSP2Q05923 314 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 MGAT5Q09328 741 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 DHX8Q14562 1220 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 PLS1Q14651 629 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 RCN1Q15293 331 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 TTF1Q15361 905 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 ELF2Q15723 593 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 FAM47AQ5JRC9 791 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 C12orf60Q5U649 245 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 MBNL2Q5VZF2 373 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 TMEM179Q6ZVK1 233 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 TAS1R1Q7RTX1 841 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 CEP57Q86XR8 500 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ARL10Q8N8L6 244 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 TMEM105Q8N8V8 129 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 REPS2Q8NFH8 660 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 OR14C36Q8NHC7 312 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 GABPB2Q8TAK5 448 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 CUL5Q93034 780 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 SPDL1Q96EA4 605 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 NAF1Q96HR8 494 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 TTC1Q99614 292 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 SLC39A3Q9BRY0 314 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ANO3Q9BYT9 981 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 VCX3BQ9H321 246 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 IFT22Q9H7X7 185 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 FBXO28Q9NVF7 368 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 COMMD8Q9NX08 183 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 SLC5A4Q9NY91 659 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ANKFY1Q9P2R3 1169 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 ZMAT5Q9UDW3 170 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 ZNF215Q9UL58 517 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 PAIP2BQ9ULR5 123 aaKnown RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 CORO1CQ9ULV4 474 aaPredicted RBP5.85□□□□□ -1.47
NUP54-218ENST00000515460 ZNF510Q9Y2H8 683 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.85□□□□□ -1.47
NUP54-218ENST00000515460 MRFAP1Q9Y605 127 aa5.85□□□□□ -1.47
NUP54-218ENST00000515460 COL12A1Q99715 3063 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 FBN2P35556 2912 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 GOLGA6L10A0A0M3HER8 536 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 VWA5AO00534 786 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 WDR46O15213 610 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 ZEB2O60315 1214 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 STAM2O75886 525 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 RNF8O76064 485 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 MBD4O95243 580 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ADCY5O95622 1261 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 SLC25A27O95847 323 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 RPSAP08865 295 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 TROVE2P10155 538 aaKnown RBP eCLIP5.84□□□□□ -1.47
NUP54-218ENST00000515460 CSF2RAP15509 400 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ATP5JP18859 108 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ADD2P35612 726 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 ARHGAP25P42331 645 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 PHEXP78562 749 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 MEF2AQ02078 507 aaPredicted RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 NUCB1Q02818 461 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 IFFO1Q0D2I5 559 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 SNX1Q13596 522 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 TRIM29Q14134 588 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 NAA25Q14CX7 972 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 FAM214AQ32MH5 1076 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 C4orf46Q504U0 113 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 C1QL3Q5VWW1 255 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 CAPRIN2Q6IMN6 1127 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 CCSAPQ6IQ19 270 aaPredicted RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 DPY19L2P1Q6NXN4 242 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 HTR3DQ70Z44 454 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 CLASRPQ8N2M8 674 aaKnown RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 GALNT15Q8N3T1 639 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 GLB1L3Q8NCI6 653 aaPredicted RBP5.84□□□□□ -1.47
NUP54-218ENST00000515460 KLHDC9Q8NEP7 349 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 TRIM58Q8NG06 486 aa5.84□□□□□ -1.47
NUP54-218ENST00000515460 GPR150Q8NGU9 434 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms