RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 RPS6KL1Q9Y6S9 549 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 H0Y626 953 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 MAGEC1O60732 1142 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 EIF2S1P05198 315 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 HSPA1AP0DMV8 641 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 HSPA1BP0DMV9 641 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 GTF2BQ00403 316 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 CAPSQ13938 189 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 NLGN2Q8NFZ4 835 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 SLC2A14Q8TDB8 520 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 BORCS5Q969J3 196 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 SH3KBP1Q96B97 665 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 S100A14Q9HCY8 104 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 LMO7Q8WWI1 1683 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 GOLGA8TH3BQL2 631 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 RECQL4O94761 1208 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 TRIM16O95361 564 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 SNHG28P0DPA3 235 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 NFIL3Q16649 462 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ARSHQ5FYA8 562 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 CXCL17Q6UXB2 119 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 CALML6Q8TD86 181 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ASB7Q9H672 318 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ERVK-5Q9HDB9 667 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 UBP1Q9NZI7 540 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 LNPEPQ9UIQ6 1025 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 PARP4Q9UKK3 1724 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 DNALI1O14645 258 aaPredicted RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 NPM3O75607 178 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 LRG1P02750 347 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 CCNG1P51959 295 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ST8SIA6P61647 398 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 BFSP2Q13515 415 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 NDUFA5Q16718 116 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 BLOC1S5Q8TDH9 187 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ZC3H15Q8WU90 426 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 BRD8Q9H0E9 1235 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 MTIF3Q9H2K0 278 aaKnown RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 VAV3Q9UKW4 847 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 A0A087WXM4 84 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 FAM237BA0A1B0GVD1 139 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 NFICP08651 508 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 TGM2P21980 687 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 AVPR1AP37288 418 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 CDH18Q13634 790 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 OVOS1Q6IE37 1185 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 TRABD2AQ86V40 505 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 PDGFCQ9NRA1 345 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 LATS2Q9NRM7 1088 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ZMYND8Q9ULU4 1186 aaPredicted RBP13.45□□□□□ -0.26
TCOF1-213ENST00000514442 RPTORQ8N122 1335 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 ROBO3Q96MS0 1386 aa13.45□□□□□ -0.26
TCOF1-213ENST00000514442 DLGAP3O95886 979 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 VCLP18206 1134 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 CYP2F1P24903 491 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 NAA20P61599 178 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 HPCAP84074 193 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 ITGADQ13349 1161 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 ACSBG2Q5FVE4 666 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 IQSEC1Q6DN90 963 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 AMIGO3Q86WK7 504 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SEPT8Q92599 483 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 CELF6Q96J87 481 aaKnown RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 CINPQ9BW66 212 aaPredicted RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 TRIM54Q9BYV2 358 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 UBE2OQ9C0C9 1292 aaKnown RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SORCS3Q9UPU3 1222 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SNX13Q9Y5W8 968 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SLC12A8A0AV02 714 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 PGK1P00558 417 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 KRT72Q14CN4 511 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 ZRANB3Q5FWF4 1079 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 LPCAT4Q643R3 524 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 LRRC57Q8N9N7 239 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SHCBP1Q8NEM2 672 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 EPS8L1Q8TE68 723 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 PRKAG3Q9UGI9 489 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 BLOC1S6Q9UL45 172 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 WASF2Q9Y6W5 498 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 MTSS1O43312 755 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 MBL2P11226 248 aaPredicted RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 NR1D2Q14995 579 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 TTC23LQ6PF05 361 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 ZNF410Q86VK4 478 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 POU5F2Q8N7G0 328 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 RFWD2Q8NHY2 731 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SOCS4Q8WXH5 440 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 DNAJC1Q96KC8 554 aaKnown RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 GPR63Q9BZJ6 419 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 LRRC19Q9H756 370 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 FBXO6Q9NRD1 293 aaPredicted RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 SPATA31C2B4DYI2 1134 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 DDX3YO15523 660 aaKnown RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 PRPF4O43172 522 aaKnown RBP eCLIP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 B4GALT5O43286 388 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 KPNA6O60684 536 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 CNOT3O75175 753 aaKnown RBP13.44□□□□□ -0.26
TCOF1-213ENST00000514442 PROCP04070 461 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 FDFT1P37268 417 aa13.44□□□□□ -0.26
TCOF1-213ENST00000514442 CSE1LP55060 971 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms