RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PKN3Q6P5Z2 889 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 RAB43Q86YS6 212 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PPIL6Q8IXY8 311 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SFRP1Q8N474 314 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 KYQ8NBH2 561 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM237Q96Q45 408 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 COLEC11Q9BWP8 271 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SEMA4AQ9H3S1 761 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MYOZ2Q9NPC6 264 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SAR1AQ9NR31 198 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 STOX2Q9P2F5 926 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 GSTK1Q9Y2Q3 226 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PCDHB2Q9Y5E7 798 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PRRG1O14668 218 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 DYNC1LI2O43237 492 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TADA2AO75478 443 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PRKCBP05771 671 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 POLBP06746 335 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PRKAR1AP10644 381 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC26A3P40879 764 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 RAP1GAPP47736 663 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 FNTAP49354 379 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ALDH7A1P49419 539 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF235Q14590 738 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TSNQ15631 228 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 FUT11Q495W5 492 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ANKRD26P1Q6NSI1 321 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 EPHX4Q8IUS5 362 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 GPC2Q8N158 579 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TBC1D19Q8N5T2 526 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 NEDD1Q8NHV4 660 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 HTRA1Q92743 480 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 CELF1Q92879 486 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ZHX1-C8orf76Q96EF9 292 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ZSWIM1Q9BR11 485 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PI4K2AQ9BTU6 479 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MKNK1Q9BUB5 465 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 IRF2BPLQ9H1B7 796 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 CNTNAP4Q9C0A0 1308 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 LOC100506127A0A0U1RQW1 187 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 HEATR9A2RTY3 570 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TULP2O00295 520 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 ADSLP30566 484 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 SKIV2L2P42285 1042 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 HERVK_113P62684 666 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 BNIP1Q12981 228 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TOP3AQ13472 1001 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 NCOA4Q13772 614 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TNFAIP8L3Q5GJ75 292 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 BHLHB9Q6PI77 547 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 DNAAF5Q86Y56 855 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 CHST13Q8NET6 341 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 KIF12Q96FN5 646 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM120AQ9BXJ8 343 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 PNPLA8Q9NP80 782 aa8.92□□□□□ -0.98
LIMCH1-218ENST00000513024 MAGEB2O15479 319 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 TRMUO75648 421 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CABYRO75952 493 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 UPP2O95045 317 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 TPTEP56180 551 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PHC1P78364 1004 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CENPCQ03188 943 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PDIA6Q15084 440 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 MTFR1Q15390 333 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 SGO1Q5FBB7 561 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 NT5DC4Q86YG4 428 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 AFG1LQ8WV93 481 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 TSPAN17Q96FV3 270 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 MTG1Q9BT17 334 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 LATS2Q9NRM7 1088 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 RUVBL2Q9Y230 463 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 DIP2AQ14689 1571 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 F8W810 466 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 UBXN8O00124 270 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PLOD3O60568 738 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 SERPINA1P01009 418 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 TXNP10599 105 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PRLRP16471 622 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CLCN2P51788 898 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 C12orf50Q8NA57 414 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 RNF149Q8NC42 400 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 ATXN2LQ8WWM7 1075 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF560Q96MR9 790 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 EMILIN2Q9BXX0 1053 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 THG1LQ9NWX6 298 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 UBE2Q2LH0YL09 131 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 ECDO95905 644 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PTPN7P35236 360 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 HMGCS2P54868 508 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CSNK2BP67870 215 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PCSK7Q16549 785 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 LIN52Q52LA3 116 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CCDC28AQ8IWP9 274 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 COLGALT2Q8IYK4 626 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 TDRD5Q8NAT2 981 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 SYN2Q92777 582 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 FAR2Q96K12 515 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CATSPERZQ9NTU4 200 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 WDR35Q9P2L0 1181 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms