RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 DRC7Q8IY82 874 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 AHI1Q8N157 1196 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PGBD3Q8N328 593 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 CARNMT1Q8N4J0 409 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PGAP3Q96FM1 320 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PCDHB18PQ96TA0 734 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 NPY6RQ99463 290 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 C2orf42Q9NWW7 574 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 EBF1Q9UH73 591 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 GGA2Q9UJY4 613 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PLA2G4CQ9UP65 541 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PRR23AA6NEV1 266 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 PRRT4C9JH25 899 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 SGK1O00141 431 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 AP5Z1O43299 807 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 RPP40O75818 363 aaKnown RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 SKILP12757 684 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 HNRNPLP14866 589 aaKnown RBP eCLIP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 PDGFRAP16234 1089 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 RDXP35241 583 aaKnown RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 PXNP49023 591 aaPredicted RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 OXCT1P55809 520 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 PITX1P78337 314 aaPredicted RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 BYSLQ13895 437 aaKnown RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 ARL13BQ3SXY8 428 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 USP39Q53GS9 565 aaKnown RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 EGFLAMQ63HQ2 1017 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 NADSYN1Q6IA69 706 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 ANO7Q6IWH7 933 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 DNAJC24Q6P3W2 148 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 LRRC31Q6UY01 552 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 SFTPA1Q8IWL2 248 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 RPRD1AQ96P16 312 aaPredicted RBP16.94■□□□□ 0.3
SF3A1-209ENST00000496189 PPP1R9BQ96SB3 815 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 TBCBQ99426 244 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 TKTL2Q9H0I9 626 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 EPC1Q9H2F5 836 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 ABCB8Q9NUT2 735 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 ELOVL2Q9NXB9 296 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 NCDNQ9UBB6 729 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 GMEB2Q9UKD1 530 aa16.94■□□□□ 0.3
SF3A1-209ENST00000496189 ATG2BQ96BY7 2078 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 TCRBV21S2A2A0A5A6 115 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 AKR1B15C9JRZ8 316 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 SYNCRIPO60506 623 aaKnown RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 PABPC1P11940 636 aaKnown RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 GZMAP12544 262 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 POLR2EP19388 210 aaKnown RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 HNRNPH3P31942 346 aaKnown RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 FLT3P36888 993 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 GSCP56915 257 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 GEN1Q17RS7 908 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 E4F1Q66K89 784 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 ACAD10Q6JQN1 1059 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 DCUN1D2Q6PH85 259 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 CHST9Q7L1S5 443 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 ZNF571Q7Z3V5 609 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 C11orf74Q86VG3 221 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 C3orf20Q8ND61 904 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 FIBINQ8TAL6 211 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 HMGB4Q8WW32 186 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 GAB3Q8WWW8 586 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 NT5C3BQ969T7 300 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 TRIM11Q96F44 468 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 VCPIP1Q96JH7 1222 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 SPACA7Q96KW9 195 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 CFAP57Q96MR6 1250 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 DNAJC7Q99615 494 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 SYT11Q9BT88 431 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 SIK2Q9H0K1 926 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 PIGVQ9NUD9 493 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 TMEM59LQ9UK28 342 aa16.93■□□□□ 0.3
SF3A1-209ENST00000496189 SMG5Q9UPR3 1016 aaKnown RBP16.93■□□□□ 0.3
SF3A1-209ENST00000496189 A0A1B0GVM2 712 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 TCAF2A6NFQ2 919 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 MFAP3LO75121 409 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 LUC7L3O95232 432 aaKnown RBP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 HLA-FP30511 346 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 WASP42768 502 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 CXCR3P49682 368 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 SGSHP51688 502 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 ST8SIA6P61647 398 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 RPS24P62847 133 aaKnown RBP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 ATP11AP98196 1134 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 DMWDQ09019 674 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 EIF4EBP2Q13542 120 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 CDO1Q16878 200 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 FNDC3BQ53EP0 1204 aaKnown RBP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 SERPINA13PQ6UXR4 307 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 MON1BQ7L1V2 547 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 PHLDB2Q86SQ0 1253 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 EMC1Q8N766 993 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 RUBCNQ92622 972 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 PRICKLE1Q96MT3 831 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 ZDHHC4Q9NPG8 344 aa16.92■□□□□ 0.3
SF3A1-209ENST00000496189 POLR3BQ9NW08 1133 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-209ENST00000496189 KIAA1522Q9P206 1035 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms