RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ARHGAP24Q8N264 748 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 OR6J1Q8NGC5 347 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 CDKL2Q92772 493 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 PGBD4Q96DM1 585 aa18.46■□□□□ 0.55
VIM-206ENST00000487938 CORO1CQ9ULV4 474 aaPredicted RBP18.46■□□□□ 0.55
VIM-206ENST00000487938 MEI4A8MW99 385 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 HACD1B0YJ81 288 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 LIN7AO14910 233 aaPredicted RBP18.46■□□□□ 0.54
VIM-206ENST00000487938 MLNP12872 115 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 CNTFP26441 200 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 ACADSBP45954 432 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 RPL34P49207 117 aaKnown RBP18.46■□□□□ 0.54
VIM-206ENST00000487938 RAP1GDS1P52306 607 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 RABGGTBP53611 331 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 TEDDM1Q5T9Z0 273 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 CYS1Q717R9 158 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 APPL2Q8NEU8 664 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 RNF139Q8WU17 664 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 PRDM12Q9H4Q4 367 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 ZFATQ9P243 1243 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 UBQLN1Q9UMX0 589 aaKnown RBP18.46■□□□□ 0.54
VIM-206ENST00000487938 PLA2G4CQ9UP65 541 aa18.46■□□□□ 0.54
VIM-206ENST00000487938 ZNF638Q14966 1978 aaKnown RBP18.45■□□□□ 0.54
VIM-206ENST00000487938 A6NHS1 94 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 MAGEC1O60732 1142 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 SERPINA6P08185 405 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 ITGA2BP08514 1039 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 ACAT1P24752 427 aaKnown RBP18.45■□□□□ 0.54
VIM-206ENST00000487938 GCKP35557 465 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 SOX4Q06945 474 aaPredicted RBP18.45■□□□□ 0.54
VIM-206ENST00000487938 SYPL2Q5VXT5 272 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 C10orf107Q8IVU9 208 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 ZNF567Q8N184 647 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 HSFY1Q96LI6 401 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 AGAP3Q96P47 875 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 SPON1Q9HCB6 807 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 ZNF358Q9NW07 568 aa18.45■□□□□ 0.54
VIM-206ENST00000487938 STX18Q9P2W9 335 aaKnown RBP18.45■□□□□ 0.54
VIM-206ENST00000487938 DPPA5A6NC42 116 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 M0QYT0 321 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 ADCY6O43306 1168 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 PLIN3O60664 434 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 C6orf222P0C671 652 aaPredicted RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 PGAM1P18669 254 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 GTF2A2P52657 109 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 DGKDQ16760 1214 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 OTUD1Q5VV17 481 aaPredicted RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 C9orf131Q5VYM1 1079 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 USP50Q70EL3 339 aaPredicted RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 PID1Q7Z2X4 250 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 WDR75Q8IWA0 830 aaKnown RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 SHKBP1Q8TBC3 707 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 PIWIL2Q8TC59 973 aaKnown RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 ATXN7L3BQ96GX2 97 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 PANX3Q96QZ0 392 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 PNPOQ9NVS9 261 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 TMEM216Q9P0N5 145 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 MAGED2Q9UNF1 606 aaPredicted RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 KCNK1O00180 336 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 GLRA3O75311 464 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 USP12O75317 370 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 STK10O94804 968 aaKnown RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 SCNN1AP37088 669 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 SNAPC2Q13487 334 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 PCLAFQ15004 111 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 RIPOR1Q6ZS17 1223 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 DPP9Q86TI2 863 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 OSTM1Q86WC4 334 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 RASSF3Q86WH2 238 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 ULK2Q8IYT8 1036 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 UCMAQ8WVF2 138 aa18.44■□□□□ 0.54
VIM-206ENST00000487938 PIN4Q9Y237 131 aaKnown RBP18.44■□□□□ 0.54
VIM-206ENST00000487938 TM7SF2O76062 418 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 PRKCGP05129 697 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 IGFBP6P24592 240 aaPredicted RBP18.43■□□□□ 0.54
VIM-206ENST00000487938 TYK2P29597 1187 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 TUBP50607 506 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 CCNA1P78396 465 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 CDK18Q07002 472 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 TUBB3Q13509 450 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 CMPK2Q5EBM0 449 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 HFE2Q6ZVN8 426 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 RSPH3Q86UC2 560 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 HACE1Q8IYU2 909 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 SLC25A41Q8N5S1 370 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 POU5F2Q8N7G0 328 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 ACMSDQ8TDX5 336 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 ZC3H15Q8WU90 426 aaKnown RBP18.43■□□□□ 0.54
VIM-206ENST00000487938 ATP2A3Q93084 1043 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 FCRL3Q96P31 734 aaPredicted RBP18.43■□□□□ 0.54
VIM-206ENST00000487938 DCDC2Q9UHG0 476 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 RPS6KL1Q9Y6S9 549 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 OPHN1O60890 802 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 CD4P01730 458 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 LINGO3P0C6S8 592 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 IFRD2Q12894 506 aaPredicted RBP18.43■□□□□ 0.54
VIM-206ENST00000487938 CMC1Q7Z7K0 106 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 OR52K1Q8NGK4 314 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 CFAP61Q8NHU2 1237 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 ADAM32Q8TC27 787 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms