RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	MIGA2	Q7L4E1	593 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	PEX26	Q7Z412	305 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ITIH5	Q86UX2	942 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	LRRC6	Q86X45	466 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	TDRP	Q86YL5	185 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ICA1L	Q8NDH6	482 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	SUPT20H	Q8NEM7	779 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	TNIP2	Q8NFZ5	429 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ANGPTL6	Q8NI99	470 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CALML6	Q8TD86	181 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	GIPC3	Q8TF64	312 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CHPT1	Q8WUD6	406 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	AFG1L	Q8WV93	481 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	SLCO2A1	Q92959	643 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	HPS3	Q969F9	1004 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ATG4C	Q96DT6	458 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	TMA16	Q96EY4	203 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CNDP2	Q96KP4	475 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	AK8	Q96MA6	479 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	NLRP4	Q96MN2	994 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CTRC	Q99895	268 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	SYT17	Q9BSW7	474 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	LRRC2	Q9BYS8	371 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	STK33	Q9BYT3	514 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CCSER1	Q9C0I3	900 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	MKRN2	Q9H000	416 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	RBM38	Q9H0Z9	239 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CAAP1	Q9H8G2	361 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	USP29	Q9HBJ7	922 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	MAGEE1	Q9HCI5	957 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	VTA1	Q9NP79	307 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	PDLIM7	Q9NR12	457 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	PAG1	Q9NWQ8	432 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ARHGEF38	Q9NXL2	777 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	RRN3	Q9NYV6	651 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	HACD3	Q9P035	362 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	C6orf203	Q9P0P8	240 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	WHRN	Q9P202	907 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ANKFY1	Q9P2R3	1169 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	FETUB	Q9UGM5	382 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ST6GALNAC2	Q9UJ37	374 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	FBXL21	Q9UKT6	434 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	AMFR	Q9UKV5	643 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	PHTF1	Q9UMS5	762 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	CHKB	Q9Y259	395 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	COQ6	Q9Y2Z9	468 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	PCDHB12	Q9Y5F1	795 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	SPO11	Q9Y5K1	396 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	IKBKG	Q9Y6K9	419 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	IVNS1ABP	Q9Y6Y0	642 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	MYO5A	Q9Y4I1	1855 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	MROH5	Q6ZUA9	1318 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	ZNF532	Q9HCE3	1301 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	MYH13	Q9UKX3	1938 aa		4.89	□□□□□ -1.63
PTCD3-212	ENST00000477520	LRP5	O75197	1615 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	FAM25E	A8MYX2	175 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520		H0Y3Z8	333 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520		M0QX08	132 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	EYA2	O00167	538 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	KIAA0391	O15091	583 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	DKC1	O60832	514 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	TM7SF2	O76062	418 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	ATE1	O95260	518 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	KRT75	O95678	551 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	LDHA	P00338	332 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	UBTFL6	P0CB48	400 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	ZCCHC18	P0CG32	403 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	CALM1	P0DP23	149 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	CALM2	P0DP24	149 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	CALM3	P0DP25	149 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	PYGM	P11217	842 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	ACAT1	P24752	427 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	NFKBIA	P25963	317 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	PML	P29590	882 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	GNA11	P29992	359 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	CHRNA5	P30532	468 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	PGM1	P36871	562 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	ACADSB	P45954	432 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	IFNAR2	P48551	515 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	GSS	P48637	474 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	VPS41	P49754	854 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	GPC3	P51654	580 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	HADHB	P55084	474 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	RHBDL3	P58872	404 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	RPS3A	P61247	264 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	IFI35	P80217	286 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	PFKP	Q01813	784 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	CDC16	Q13042	620 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	MAPK7	Q13164	816 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	PTK2B	Q14289	1009 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	PDK3	Q15120	406 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	TCEAL1	Q15170	157 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	CYP1B1	Q16678	543 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	ZNF568	Q3ZCX4	644 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	TDRD12	Q587J7	1177 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	MIIP	Q5JXC2	388 aa		4.88	□□□□□ -1.63
PTCD3-212	ENST00000477520	METTL24	Q5JXM2	366 aa		4.88	□□□□□ -1.63

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