RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DERAQ9Y315 318 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 C2CD2Q9Y426 696 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 RBM19Q9Y4C8 960 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 ANKRD63C9JTQ0 380 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 MUSKO15146 869 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 NEMFO60524 1076 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 TLR5O60602 858 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 STC2O76061 302 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 PDGFRBP09619 1106 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 PLCG1P19174 1290 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 ITGB7P26010 798 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 YWHAQP27348 245 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 OAS2P29728 719 aaKnown RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 MAT2AP31153 395 aaKnown RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 SLC6A4P31645 630 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 DRD3P35462 400 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 MATR3P43243 847 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP4-209ENST00000475873 HARS2P49590 506 aaKnown RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 CYP27A1Q02318 531 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 SRSF11Q05519 484 aaKnown RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 RAD51AP2Q09MP3 1159 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 KCNMA1Q12791 1236 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 CST6Q15828 149 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 TTC31Q49AM3 519 aaPredicted RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 FNDC3BQ53EP0 1204 aaKnown RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 MDH1BQ5I0G3 518 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 ATP1A1-AS1Q5TC04 95 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 TDRD10Q5VZ19 366 aaKnown RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 C4orf50Q6ZRC1 276 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 HEATR4Q86WZ0 1026 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 SLC35F3Q8IY50 421 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 TMEM86AQ8N2M4 240 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 SYT2Q8N9I0 419 aaPredicted RBP5.04□□□□□ -1.6
USP4-209ENST00000475873 TMEM145Q8NBT3 493 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 OR13H1Q8NG92 308 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 OR6B3Q8NGW1 331 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 CPT1CQ8TCG5 803 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 WFDC5Q8TCV5 224 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 UCMAQ8WVF2 138 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 USP7Q93009 1102 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 NKD1Q969G9 470 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 SLITRK1Q96PX8 696 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 KCNK16Q96T55 309 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 DPEP3Q9H4B8 488 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 USP29Q9HBJ7 922 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 EPB41L5Q9HCM4 733 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 KLHL11Q9NVR0 708 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 GDAP2Q9NXN4 497 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 NUDT5Q9UKK9 219 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 AGAP1Q9UPQ3 857 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 ENTPD4Q9Y227 616 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 MAP4K5Q9Y4K4 846 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 SNX9Q9Y5X1 595 aa5.04□□□□□ -1.6
USP4-209ENST00000475873 MN1Q10571 1320 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 A0A1W2PQ27 194 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 A0A1W2PQ64 194 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 A0A1W2PQC6 194 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 A0A1W2PQM1 296 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 VWA3AA6NCI4 1184 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 LRRC72A6NJI9 287 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 D6RAR5 112 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 E9PMD0 336 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 HUS1O60921 280 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 SIN3BO75182 1162 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 RNASEH2AO75792 299 aaKnown RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 DEXIO95424 95 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 PIGRP01833 764 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ITGB3P05106 788 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ANXA13P27216 316 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 HOXD9P28356 352 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 PCSK1P29120 753 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 SLC5A3P53794 718 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 EVCP57679 992 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 OVGP1Q12889 678 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 STRN3Q13033 797 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ZXDCQ2QGD7 858 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 DEFB133Q30KQ1 61 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 TSGA10IPQ3SY00 556 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 TPRG1LQ5T0D9 272 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 NUGGCQ68CJ6 796 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 RINT1Q6NUQ1 792 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ZCCHC8Q6NZY4 707 aaKnown RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 PAQR9Q6ZVX9 377 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 KIAA0907Q7Z7F0 614 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 MMAAQ8IVH4 418 aaKnown RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 CD302Q8IX05 232 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 SLC34A3Q8N130 599 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 NUP93Q8N1F7 819 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 TOP6BLQ8N6T0 577 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ZNF548Q8NEK5 533 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 ZMIZ2Q8NF64 920 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 OR14C36Q8NHC7 312 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 MYCBPAPQ8TBZ2 947 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 GANCQ8TET4 914 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 UBE2Q2Q8WVN8 375 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 OVCA2Q8WZ82 227 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 KCNN1Q92952 543 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 FAM131CQ96AQ9 280 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 PPP1R13BQ96KQ4 1090 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms