RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 JUNP05412 331 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 TSHRP16473 764 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 CD97P48960 835 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 ZNF423Q2M1K9 1284 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 RC3H1Q5TC82 1133 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 PCDH20Q8N6Y1 951 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 UBA3Q8TBC4 463 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 SLC35B4Q969S0 331 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 PRMT6Q96LA8 375 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 TMEM79Q9BSE2 394 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 UNKQ9C0B0 810 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 SDCBP2Q9H190 292 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 GMPR2Q9P2T1 348 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 BARX2Q9UMQ3 279 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 ARHGEF37A1IGU5 675 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 ERVK-10P10266 1014 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 RPS6P62753 249 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 TFAMQ00059 246 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 IRF9Q00978 393 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 MGAT5BQ3V5L5 792 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 FAM102AQ5T9C2 384 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 KCNT2Q6UVM3 1135 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 CYP2R1Q6VVX0 501 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 BNC2Q6ZN30 1099 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 Q6ZNX1 250 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 PLD5Q8N7P1 536 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 NIPA2Q8N8Q9 360 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 SYTL5Q8TDW5 730 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 NLRP4Q96MN2 994 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 CIB1Q99828 191 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 EBNA1BP2Q99848 306 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 NUF2Q9BZD4 464 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 DHX35Q9H5Z1 703 aaKnown RBP12.02□□□□□ -0.49
CPSF3-202ENST00000460593 MFHAS1Q9Y4C4 1052 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 LYPLA2O95372 231 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CKMT2P17540 419 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CD247P20963 164 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 TBXAS1P24557 533 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 ERI1Q8IV48 349 aaKnown RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CMASQ8NFW8 434 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CLEC4DQ8WXI8 215 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 RTKNQ9BST9 563 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 TCHPQ9BT92 498 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 RMI1Q9H9A7 625 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 DNAJC28Q9NX36 388 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 COPG2Q9UBF2 871 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 J3QRK9 145 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 HDCP19113 662 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CLDN10P78369 228 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 RALGDSQ12967 914 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 BTG3Q14201 252 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 MTX3Q5HYI7 312 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 GRAMD4Q6IC98 578 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 PACS1Q6VY07 963 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 XYLT1Q86Y38 959 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CCDC60Q8IWA6 550 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 TMEM102Q8N9M5 508 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 KYQ8NBH2 561 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CHURC1Q8WUH1 139 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 FBXL8Q96CD0 374 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 TWNKQ96RR1 684 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CGRRF1Q99675 332 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 NTPCRQ9BSD7 190 aaKnown RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 KLC2Q9H0B6 622 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 PCDH18Q9HCL0 1135 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 C20orf96Q9NUD7 363 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-202ENST00000460593 PAK5Q9P286 719 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 CNTN6Q9UQ52 1028 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 TMX2Q9Y320 296 aa12.01□□□□□ -0.49
CPSF3-202ENST00000460593 SH3PXD2BA1X283 911 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 CLIC3O95833 236 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 ZNF26P17031 533 aaPredicted RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 SAT1P21673 171 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 TYK2P29597 1187 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 CDK9P50750 372 aaKnown RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 BCAR1P56945 870 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 MCCD1P59942 119 aaPredicted RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 TAZQ16635 292 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 KRT80Q6KB66 452 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 CHERPQ8IWX8 916 aaKnown RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 DDI1Q8WTU0 396 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 ATP2A3Q93084 1043 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 RANBP9Q96S59 729 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 SLC2A11Q9BYW1 496 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 NAA50Q9GZZ1 169 aaKnown RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 TRPV6Q9H1D0 765 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 TCF7L2Q9NQB0 619 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 ADA2Q9NZK5 511 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 SFMBT1Q9UHJ3 866 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 SNX13Q9Y5W8 968 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 POLRMTO00411 1230 aaKnown RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 TRDMT1O14717 391 aaKnown RBP12□□□□□ -0.49
CPSF3-202ENST00000460593 KRT19P08727 400 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 GNAO1P09471 354 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 CPA3P15088 417 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 ALDH1B1P30837 517 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 EPHX2P34913 555 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 HSD17B4P51659 736 aa12□□□□□ -0.49
CPSF3-202ENST00000460593 GSTM4Q03013 218 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms