RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ST8SIA6P61647 398 aa15.08■□□□□ 0
SDC1-204ENST00000429035 CDH18Q13634 790 aa15.08■□□□□ 0
SDC1-204ENST00000429035 STILQ15468 1287 aa15.08■□□□□ 0
SDC1-204ENST00000429035 TEAD4Q15561 434 aa15.08■□□□□ 0
SDC1-204ENST00000429035 ZNF776Q68DI1 518 aaPredicted RBP15.08■□□□□ 0
SDC1-204ENST00000429035 RAB44Q7Z6P3 723 aaPredicted RBP15.08■□□□□ 0
SDC1-204ENST00000429035 ADIPOR2Q86V24 386 aa15.08■□□□□ 0
SDC1-204ENST00000429035 CCDC117Q8IWD4 279 aaPredicted RBP15.08■□□□□ 0
SDC1-204ENST00000429035 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.08■□□□□ 0
SDC1-204ENST00000429035 HJURPQ8NCD3 748 aaPredicted RBP15.08■□□□□ 0
SDC1-204ENST00000429035 ENGASEQ8NFI3 743 aa15.08■□□□□ 0
SDC1-204ENST00000429035 ADAM32Q8TC27 787 aa15.08■□□□□ 0
SDC1-204ENST00000429035 NELFBQ8WX92 580 aa15.08■□□□□ 0
SDC1-204ENST00000429035 IRGQQ8WZA9 623 aa15.08■□□□□ 0
SDC1-204ENST00000429035 PRICKLE1Q96MT3 831 aaPredicted RBP15.08■□□□□ 0
SDC1-204ENST00000429035 GTPBP4Q9BZE4 634 aaKnown RBP15.08■□□□□ 0
SDC1-204ENST00000429035 TMEM245Q9H330 911 aa15.08■□□□□ 0
SDC1-204ENST00000429035 MTG2Q9H4K7 406 aa15.08■□□□□ 0
SDC1-204ENST00000429035 APOBEC2Q9Y235 224 aaKnown RBP15.08■□□□□ 0
SDC1-204ENST00000429035 NFE2L3Q9Y4A8 694 aa15.08■□□□□ 0
SDC1-204ENST00000429035 CEP83Q9Y592 693 aa15.08■□□□□ 0
SDC1-204ENST00000429035 SLCO1B1Q9Y6L6 691 aa15.08■□□□□ 0
SDC1-204ENST00000429035 ASPMQ8IZT6 3477 aa15.08■□□□□ 0
SDC1-204ENST00000429035 KNL1Q8NG31 2342 aa15.08■□□□□ 0
SDC1-204ENST00000429035 AKAP13Q12802 2813 aa15.07■□□□□ 0
SDC1-204ENST00000429035 BIN1O00499 593 aa15.07■□□□□ 0
SDC1-204ENST00000429035 FBXO21O94952 628 aa15.07■□□□□ 0
SDC1-204ENST00000429035 NUMBP49757 651 aa15.07■□□□□ 0
SDC1-204ENST00000429035 RPS14P62263 151 aaKnown RBP15.07■□□□□ 0
SDC1-204ENST00000429035 BNC1Q01954 994 aa15.07■□□□□ 0
SDC1-204ENST00000429035 BECN1Q14457 450 aa15.07■□□□□ 0
SDC1-204ENST00000429035 CNGA2Q16280 664 aa15.07■□□□□ 0
SDC1-204ENST00000429035 PTPRNQ16849 979 aa15.07■□□□□ 0
SDC1-204ENST00000429035 HLA-BQ31612 363 aa15.07■□□□□ 0
SDC1-204ENST00000429035 CCDC157Q569K6 752 aa15.07■□□□□ 0
SDC1-204ENST00000429035 FAM133BQ5BKY9 247 aaKnown RBP15.07■□□□□ 0
SDC1-204ENST00000429035 PIK3R6Q5UE93 754 aa15.07■□□□□ 0
SDC1-204ENST00000429035 NADSYN1Q6IA69 706 aa15.07■□□□□ 0
SDC1-204ENST00000429035 DHX40Q8IX18 779 aaKnown RBP15.07■□□□□ 0
SDC1-204ENST00000429035 SCML4Q8N228 414 aa15.07■□□□□ 0
SDC1-204ENST00000429035 DQX1Q8TE96 717 aaKnown RBP15.07■□□□□ 0
SDC1-204ENST00000429035 SLC35F5Q8WV83 523 aa15.07■□□□□ 0
SDC1-204ENST00000429035 DHTKD1Q96HY7 919 aaPredicted RBP15.07■□□□□ 0
SDC1-204ENST00000429035 SERPINB11Q96P15 392 aa15.07■□□□□ 0
SDC1-204ENST00000429035 DDX50Q9BQ39 737 aaKnown RBP15.07■□□□□ 0
SDC1-204ENST00000429035 ZSWIM1Q9BR11 485 aa15.07■□□□□ 0
SDC1-204ENST00000429035 NUCKS1Q9H1E3 243 aaKnown RBP15.07■□□□□ 0
SDC1-204ENST00000429035 FBRSQ9HAH7 460 aa15.07■□□□□ 0
SDC1-204ENST00000429035 PRSS16Q9NQE7 514 aa15.07■□□□□ 0
SDC1-204ENST00000429035 STOML2Q9UJZ1 356 aa15.07■□□□□ 0
SDC1-204ENST00000429035 PCOLCE2Q9UKZ9 415 aa15.07■□□□□ 0
SDC1-204ENST00000429035 PLXNB3Q9ULL4 1909 aa15.07■□□□□ 0
SDC1-204ENST00000429035 CABIN1Q9Y6J0 2220 aa15.07■□□□□ 0
SDC1-204ENST00000429035 CAPN9O14815 690 aa15.06■□□□□ 0
SDC1-204ENST00000429035 IRAK2O43187 625 aa15.06■□□□□ 0
SDC1-204ENST00000429035 GABBR2O75899 941 aa15.06■□□□□ 0
SDC1-204ENST00000429035 IGLV3-27P01718 113 aa15.06■□□□□ 0
SDC1-204ENST00000429035 PPP1R2P41236 205 aa15.06■□□□□ 0
SDC1-204ENST00000429035 CSKP41240 450 aa15.06■□□□□ 0
SDC1-204ENST00000429035 AFF3P51826 1226 aaKnown RBP15.06■□□□□ 0
SDC1-204ENST00000429035 RPS24P62847 133 aaKnown RBP15.06■□□□□ 0
SDC1-204ENST00000429035 TAC4Q86UU9 113 aa15.06■□□□□ 0
SDC1-204ENST00000429035 CHSY1Q86X52 802 aa15.06■□□□□ 0
SDC1-204ENST00000429035 CFAP52Q8N1V2 620 aa15.06■□□□□ 0
SDC1-204ENST00000429035 ZNF557Q8N988 423 aaPredicted RBP15.06■□□□□ 0
SDC1-204ENST00000429035 SPATA20Q8TB22 786 aa15.06■□□□□ 0
SDC1-204ENST00000429035 HSFY1Q96LI6 401 aa15.06■□□□□ 0
SDC1-204ENST00000429035 PCED1AQ9H1Q7 454 aa15.06■□□□□ 0
SDC1-204ENST00000429035 TM9SF3Q9HD45 589 aa15.06■□□□□ 0
SDC1-204ENST00000429035 SUN2Q9UH99 717 aa15.06■□□□□ 0
SDC1-204ENST00000429035 NAALADL1Q9UQQ1 740 aa15.06■□□□□ 0
SDC1-204ENST00000429035 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.06■□□□□ 0
SDC1-204ENST00000429035 SNX11Q9Y5W9 270 aa15.06■□□□□ 0
SDC1-204ENST00000429035 BICDL2A1A5D9 508 aa15.05■□□□□ -0
SDC1-204ENST00000429035 FLRT2O43155 660 aa15.05■□□□□ -0
SDC1-204ENST00000429035 SIN3BO75182 1162 aa15.05■□□□□ -0
SDC1-204ENST00000429035 APOEP02649 317 aa15.05■□□□□ -0
SDC1-204ENST00000429035 NUCB2P80303 420 aa15.05■□□□□ -0
SDC1-204ENST00000429035 IL9RQ01113 521 aa15.05■□□□□ -0
SDC1-204ENST00000429035 RING1Q06587 406 aa15.05■□□□□ -0
SDC1-204ENST00000429035 KIF19Q2TAC6 998 aa15.05■□□□□ -0
SDC1-204ENST00000429035 RAP1GAP2Q684P5 730 aa15.05■□□□□ -0
SDC1-204ENST00000429035 TTI2Q6NXR4 508 aa15.05■□□□□ -0
SDC1-204ENST00000429035 DENND1BQ6P3S1 775 aa15.05■□□□□ -0
SDC1-204ENST00000429035 MMS22LQ6ZRQ5 1243 aa15.05■□□□□ -0
SDC1-204ENST00000429035 CREBRFQ8IUR6 639 aa15.05■□□□□ -0
SDC1-204ENST00000429035 LGI2Q8N0V4 545 aa15.05■□□□□ -0
SDC1-204ENST00000429035 RHBDD1Q8TEB9 315 aa15.05■□□□□ -0
SDC1-204ENST00000429035 ADAMTS14Q8WXS8 1223 aa15.05■□□□□ -0
SDC1-204ENST00000429035 BIRC7Q96CA5 298 aa15.05■□□□□ -0
SDC1-204ENST00000429035 MYEOVQ96EZ4 313 aa15.05■□□□□ -0
SDC1-204ENST00000429035 FCRL2Q96LA5 508 aaPredicted RBP15.05■□□□□ -0
SDC1-204ENST00000429035 TIGD1Q96MW7 591 aa15.05■□□□□ -0
SDC1-204ENST00000429035 INTS2Q9H0H0 1204 aaKnown RBP15.05■□□□□ -0
SDC1-204ENST00000429035 TJP2Q9UDY2 1190 aa15.05■□□□□ -0
SDC1-204ENST00000429035 NCKAP1Q9Y2A7 1128 aa15.05■□□□□ -0
SDC1-204ENST00000429035 CACNA1GO43497 2377 aa15.05■□□□□ -0
SDC1-204ENST00000429035 CHD6Q8TD26 2715 aa15.05■□□□□ -0
SDC1-204ENST00000429035 SYNJ2BP-COX16A0A087WUM0 186 aa15.04■□□□□ -0
SDC1-204ENST00000429035 A0A1W2PP55 124 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms