RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SEMA3DO95025 777 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 C22orf31O95567 290 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 UQCRBP14927 111 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ANPEPP15144 967 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ACLYP53396 1101 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 KRT17Q04695 432 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CACNB2Q08289 660 aaPredicted RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 WDR72Q3MJ13 1102 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 TAF1BQ53T94 588 aaPredicted RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 TMC7Q7Z402 723 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 TAMM41Q96BW9 452 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 VPS35Q96QK1 796 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 TCF12Q99081 682 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 BTBD10Q9BSF8 475 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 SERHL2Q9H4I8 314 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 VPS51Q9UID3 782 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 PSME4Q14997 1843 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 HAT1O14929 419 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ZNF862O60290 1169 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 GJB6O95452 261 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CBX6O95503 412 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 HOXD13P35453 343 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 NR1H2P55055 460 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CCL14Q16627 93 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 KLHDC7AQ5VTJ3 777 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 SCARA5Q6ZMJ2 495 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CBWD2Q8IUF1 395 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 SHISA4Q96DD7 197 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 HPDLQ96IR7 371 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CNBD2Q96M20 576 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 DCUN1D5Q9BTE7 237 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 NT5C1AQ9BXI3 368 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 AP1M1Q9BXS5 423 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 NOL6Q9H6R4 1146 aaKnown RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 ECM29Q5VYK3 1845 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ZNF839A8K0R7 811 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 CYBAP13498 195 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 MX2P20592 715 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 RFC2P35250 354 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 PLTPP55058 493 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ECM1Q16610 540 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ATL1Q8WXF7 558 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 UNKQ9C0B0 810 aaKnown RBP10.06□□□□□ -0.8
USP54-205ENST00000424265 GTF2IRD1Q9UHL9 959 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 VANGL2Q9ULK5 521 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 SLC8A2Q9UPR5 921 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ETFBP38117 255 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 SLC9A3P48764 834 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 GNG2P59768 71 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 KYNUQ16719 465 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 TIGD2Q4W5G0 525 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 SPDYCQ5MJ68 293 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 PEX10O60683 326 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 AKAP3O75969 853 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 PIGRP01833 764 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 RPL17P18621 184 aaKnown RBP10.06□□□□□ -0.8
USP54-205ENST00000424265 ADSLP30566 484 aaPredicted RBP10.06□□□□□ -0.8
USP54-205ENST00000424265 MMP13P45452 471 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 LHX1P48742 406 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 PHC1P78364 1004 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 CALCOCO2Q13137 446 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 TRIP10Q15642 601 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 FAM187BQ17R55 369 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 RSAD1Q9HA92 442 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 THAP1Q9NVV9 213 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 IGKV6D-21A0A0A0MT36 114 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 C15orf38-AP3S2A0A0A6YYH1 394 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 A0A1W2PQ67 120 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 CCDC188H7C350 402 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ZNF865P0CJ78 1059 aaPredicted RBP10.06□□□□□ -0.8
USP54-205ENST00000424265 GCNT1Q02742 428 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 KRT80Q6KB66 452 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ARPINQ7Z6K5 226 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 LRRC6Q86X45 466 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 DPP7Q9UHL4 492 aa10.06□□□□□ -0.8
USP54-205ENST00000424265 ARVCFO00192 962 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ZBTB39O15060 712 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 BRAFP15056 766 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ALDH7A1P49419 539 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 ATN1P54259 1190 aaPredicted RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 PURAQ00577 322 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 GNA13Q14344 377 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 VEPH1Q14D04 833 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 NADK2Q4G0N4 442 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ALDH16A1Q8IZ83 802 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 EIF1ADQ8N9N8 165 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 NSL1Q96IY1 281 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 MAGEB18Q96M61 343 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 C17orf80Q9BSJ5 609 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 EBF3Q9H4W6 596 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 DDX3XO00571 662 aaKnown RBP eCLIP10.05□□□□□ -0.8
USP54-205ENST00000424265 EPN2O95208 641 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 CCL5P13501 91 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 RPL9P32969 192 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 MCCD1P59942 119 aaPredicted RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 CUL2Q13617 745 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 MMAAQ8IVH4 418 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 LINC00469Q8N7U9 141 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 SLC26A7Q8TE54 656 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 PGM2Q96G03 612 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms