RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FSBPO95073 299 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 IGLV3-19P01714 112 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 KRT5P13647 590 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 OXTRP30559 389 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 CTSOP43234 321 aaPredicted RBP12.02□□□□□ -0.48
USP4-204ENST00000416417 SLC11A2P49281 568 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 ZNF132P52740 706 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 PITX1P78337 314 aaPredicted RBP12.02□□□□□ -0.48
USP4-204ENST00000416417 KCNH2Q12809 1159 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 HLA-BQ31612 363 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 FSCBQ5H9T9 825 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 SYPL2Q5VXT5 272 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 TAC4Q86UU9 113 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 MARCH9Q86YJ5 346 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 AHI1Q8N157 1196 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 SCML4Q8N228 414 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.02□□□□□ -0.48
USP4-204ENST00000416417 EHBP1Q8NDI1 1231 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 C1orf216Q8TAB5 229 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 SETD7Q8WTS6 366 aaKnown RBP12.02□□□□□ -0.48
USP4-204ENST00000416417 IRGQQ8WZA9 623 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 FAM149B1Q96BN6 582 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 TJP2Q9UDY2 1190 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 CYTH4Q9UIA0 394 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 INTS6Q9UL03 887 aaKnown RBP12.02□□□□□ -0.48
USP4-204ENST00000416417 NEUROG3Q9Y4Z2 214 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 PCDHB9Q9Y5E1 797 aa12.02□□□□□ -0.48
USP4-204ENST00000416417 FAM47DPA6NHR8 397 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 SRRM3A6NNA2 597 aaPredicted RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 LATS1O95835 1130 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 DLDP09622 509 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 FTH1P19P0C7X4 201 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 POLR2EP19388 210 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 CSKP41240 450 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 GPD2P43304 727 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 NUCB2P80303 420 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 MORC3Q14149 939 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 KCNT1Q5JUK3 1230 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 RAB44Q7Z6P3 723 aaPredicted RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 SLCO6A1Q86UG4 719 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 CREBRFQ8IUR6 639 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 MFN1Q8IWA4 741 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 TRIM59Q8IWR1 403 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 UNC45BQ8IWX7 931 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 DHX40Q8IX18 779 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 GANCQ8TET4 914 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 GOLGA1Q92805 767 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 MYO19Q96H55 970 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 LMLNQ96KR4 655 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 CRACR2AQ9BSW2 395 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 SRRTQ9BXP5 876 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 UBE2TQ9NPD8 197 aaPredicted RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 SERGEFQ9UGK8 458 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 HOOK1Q9UJC3 728 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 BTBD3Q9Y2F9 522 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 MSRB2Q9Y3D2 182 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 SNX11Q9Y5W9 270 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 CHD6Q8TD26 2715 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 CKAP5Q14008 2032 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 FAM170AA1A519 330 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 SIN3BO75182 1162 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 LETM1O95202 739 aaPredicted RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 SEMA4FO95754 770 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 MATKP42679 507 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 IL9RQ01113 521 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 TAF5Q15542 800 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 KIF19Q2TAC6 998 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 ZC3H12AQ5D1E8 599 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 RAP1GAP2Q684P5 730 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 NUGGCQ68CJ6 796 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 CIR1Q86X95 450 aaPredicted RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 LGI2Q8N0V4 545 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 BIRC7Q96CA5 298 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 HSFY1Q96LI6 401 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 GTPBP4Q9BZE4 634 aaKnown RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 TM9SF3Q9HD45 589 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 TM7SF3Q9NS93 570 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 PCOLCE2Q9UKZ9 415 aa12.01□□□□□ -0.49
USP4-204ENST00000416417 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.01□□□□□ -0.49
USP4-204ENST00000416417 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.01□□□□□ -0.49
USP4-204ENST00000416417 IGF2RP11717 2491 aa12□□□□□ -0.49
USP4-204ENST00000416417 SYNJ2BP-COX16A0A087WUM0 186 aa12□□□□□ -0.49
USP4-204ENST00000416417 TTC34A8MYJ7 566 aa12□□□□□ -0.49
USP4-204ENST00000416417 E5RJQ4 531 aa12□□□□□ -0.49
USP4-204ENST00000416417 PMM2O15305 246 aa12□□□□□ -0.49
USP4-204ENST00000416417 PAPSS1O43252 624 aaPredicted RBP12□□□□□ -0.49
USP4-204ENST00000416417 CBFA2T3O75081 653 aa12□□□□□ -0.49
USP4-204ENST00000416417 FBXO21O94952 628 aa12□□□□□ -0.49
USP4-204ENST00000416417 AFPP02771 609 aaKnown RBP12□□□□□ -0.49
USP4-204ENST00000416417 DNTTP04053 509 aa12□□□□□ -0.49
USP4-204ENST00000416417 ATP5BP06576 529 aaKnown RBP12□□□□□ -0.49
USP4-204ENST00000416417 ZNF445P59923 1031 aa12□□□□□ -0.49
USP4-204ENST00000416417 CETN1Q12798 172 aa12□□□□□ -0.49
USP4-204ENST00000416417 SLC14A1Q13336 389 aa12□□□□□ -0.49
USP4-204ENST00000416417 BECN1Q14457 450 aa12□□□□□ -0.49
USP4-204ENST00000416417 ARHGAP44Q17R89 818 aa12□□□□□ -0.49
USP4-204ENST00000416417 DCAF6Q58WW2 860 aa12□□□□□ -0.49
USP4-204ENST00000416417 MS4A13Q5J8X5 152 aa12□□□□□ -0.49
USP4-204ENST00000416417 PITRM1Q5JRX3 1037 aa12□□□□□ -0.49
USP4-204ENST00000416417 PRAMEF14Q5SWL7 426 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms