RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 EMC1Q8N766 993 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 LXNQ9BS40 222 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ZCWPW1Q9H0M4 648 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 TMEM138Q9NPI0 162 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 PSMD13Q9UNM6 376 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 FMR1Q06787 632 aaKnown RBP eCLIP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 GALNT3Q14435 633 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SPANXN3Q5MJ09 141 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 PLA2G4FQ68DD2 849 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 ANKRD26P1Q6NSI1 321 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 GALNT18Q6P9A2 607 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 PI16Q6UXB8 463 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 MACC1Q6ZN28 852 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SOAT1P35610 550 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 ALDH6A1Q02252 535 aaKnown RBP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SNRNP35Q16560 246 aaKnown RBP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF276Q8N554 614 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 TAMM41Q96BW9 452 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 RNF145Q96MT1 663 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SLC22A2O15244 555 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 GSTM5P46439 218 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 DGCR6LQ9BY27 220 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 CHORDC1Q9UHD1 332 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 DGAT1O75907 488 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SLC9A3P48764 834 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 HKDC1Q2TB90 917 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 CRTC3Q6UUV7 619 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SLCO6A1Q86UG4 719 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 VPS4AQ9UN37 437 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 CST8O60676 142 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 PTPN7P35236 360 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 OSBP2Q969R2 916 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 MGAT4DA6NG13 374 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 CYP26A1O43174 497 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 LCN1P1Q5VSP4 162 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 DSTYKQ6XUX3 929 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 FAM220AQ7Z4H9 259 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 LHFPL3Q86UP9 236 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 C11orf74Q86VG3 221 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SRPK1Q96SB4 655 aaKnown RBP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 STRBPQ96SI9 672 aaKnown RBP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 SPATA5L1Q9BVQ7 753 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 RGSL1A5PLK6 1076 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 PTGES3LE9PB15 166 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 YES1P07947 543 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 GPD1P21695 349 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 CDC25AP30304 524 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 HNF4AP41235 474 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 PPP3CCP48454 512 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 ACAD10Q6JQN1 1059 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF496Q96IT1 587 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-206ENST00000409809 PNPLA7Q6ZV29 1317 aa13.16□□□□□ -0.3
COL6A3-206ENST00000409809 CLRN2A0PK11 232 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 RIMBP2O15034 1052 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 PDGFRAP16234 1089 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 GUCY1A2P33402 732 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 FXR2P51116 673 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 CACNB1Q02641 598 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 FBXO25Q8TCJ0 367 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 RTKNQ9BST9 563 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 AP4B1Q9Y6B7 739 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 V9GYQ6 96 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 SLC22A1O15245 554 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 ASMTLO95671 621 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 PGK1P00558 417 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 PSMA1P25786 263 aaKnown RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 INSCQ1MX18 579 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 EPB41L1Q9H4G0 881 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 UBQLN1Q9UMX0 589 aaKnown RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 DDX3XO00571 662 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 PRMT5O14744 637 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 BCAMP50895 628 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 SNAP47Q5SQN1 464 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 PYDC1Q8WXC3 89 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 WRNIP1Q96S55 665 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 TBCBQ99426 244 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 JAG2Q9Y219 1238 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 BTNL10A8MVZ5 291 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 TIE1P35590 1138 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 GSCP56915 257 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 MTX3Q5HYI7 312 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 ERI1Q8IV48 349 aaKnown RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 FAM71DQ8N9W8 422 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 SMURF2Q9HAU4 748 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 NMRAL1Q9HBL8 299 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 CHMP1AQ9HD42 196 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 AASSQ9UDR5 926 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 ERVV-1B6SEH8 477 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 PGRMC2O15173 223 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 SUPT7LO94864 414 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 GSTM1P09488 218 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 SLC27A3Q5K4L6 730 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 FAM172AQ8WUF8 416 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 RBM4BQ9BQ04 359 aaKnown RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 RBM4Q9BWF3 364 aaKnown RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 TNPO3Q9Y5L0 923 aaKnown RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 LRIG2O94898 1065 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 RBP5P82980 135 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms