RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ARHGAP18Q8N392 663 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 SUMF1Q8NBK3 374 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 IPO4Q8TEX9 1081 aaKnown RBP9.59□□□□□ -0.87
VPS53-203ENST00000401468 LRRN4Q8WUT4 740 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 ATRIPQ8WXE1 791 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 RMDN1Q96DB5 314 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 TRIM11Q96F44 468 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 TRIM62Q9BVG3 475 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 LINC00597Q9H2U6 94 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 CHRDQ9H2X0 955 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 KCNF1Q9H3M0 494 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 NMUR1Q9HB89 426 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 ABCC13Q9NSE7 274 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS53-203ENST00000401468 GMIPQ9P107 970 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 NCDNQ9UBB6 729 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 REXO2Q9Y3B8 237 aaKnown RBP9.59□□□□□ -0.87
VPS53-203ENST00000401468 EPN1Q9Y6I3 576 aaPredicted RBP9.59□□□□□ -0.87
VPS53-203ENST00000401468 NYNRINQ9P2P1 1898 aaKnown RBP9.59□□□□□ -0.87
VPS53-203ENST00000401468 TMEM131Q92545 1883 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 CHD5Q8TDI0 1954 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 A0A1W2PQH9 124 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 MAN1A2O60476 641 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 HSF2BPO75031 334 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 DAB1O75553 588 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 EGFP01133 1207 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 IGLV3-25P01717 112 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 LTFP02788 710 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 CKMP06732 381 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TMEM253P0C7T8 217 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TDGF1P13385 188 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TCF3P15923 654 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 RRM1P23921 792 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 GALCP54803 685 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 HADHBP55084 474 aaKnown RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 SEC13P55735 322 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 YWHAGP61981 247 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS53-203ENST00000401468 YWHAZP63104 245 aaKnown RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 MAMLD1Q13495 774 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 CCDC122Q5T0U0 273 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 BSPRYQ5W0U4 402 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 FSTL4Q6MZW2 842 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TRNP1Q6NT89 227 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 ZNF662Q6ZS27 426 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 LINC00528Q8N1L1 170 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 KIAA1958Q8N8K9 716 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 FNIP1Q8TF40 1166 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 MRPS31Q92665 395 aaKnown RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 PGAP3Q96FM1 320 aaPredicted RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 CDK5RAP1Q96SZ6 601 aaKnown RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 C11orf70Q9BRQ4 267 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS53-203ENST00000401468 FAM117AQ9C073 453 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 POPDC2Q9HBU9 364 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 PRMT8Q9NR22 394 aaPredicted RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 ST7Q9NRC1 585 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 SPTLC3Q9NUV7 552 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TDP1Q9NUW8 608 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TMEM51Q9NW97 253 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 TRPM5Q9NZQ8 1165 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 SMG5Q9UPR3 1016 aaKnown RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 INVSQ9Y283 1065 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 MRPS17Q9Y2R5 130 aaKnown RBP9.58□□□□□ -0.88
VPS53-203ENST00000401468 FAM208BQ5VWN6 2430 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 DOCK9Q9BZ29 2069 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 PLXND1Q9Y4D7 1925 aa9.58□□□□□ -0.88
VPS53-203ENST00000401468 A0A0A6YYK5 440 aaPredicted RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 BTNL10A8MVZ5 291 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 PIK3R2O00459 728 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 MAN2B1O00754 1011 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 NCAM2O15394 837 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 PJA2O43164 708 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 ENDOD1O94919 500 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 IGLV3-27P01718 113 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 SLC7A9P82251 487 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 SPEM2Q0P670 501 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 MESP2Q0VG99 397 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 RUNX3Q13761 415 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 TAF5Q15542 800 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 ITPRIPL2Q3MIP1 535 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 ARHGAP29Q52LW3 1261 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 C2CD6Q53TS8 623 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 OTUD1Q5VV17 481 aaPredicted RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 ZC3H14Q6PJT7 736 aaKnown RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 CCDC116Q8IYX3 515 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 MEIOBQ8N635 442 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 CELF5Q8N6W0 485 aaKnown RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 SH3RF2Q8TEC5 729 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 NDRG1Q92597 394 aaKnown RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 CENPIQ92674 756 aaPredicted RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 EZH1Q92800 747 aaPredicted RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 WBP2Q969T9 261 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 HHIPQ96QV1 700 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 ARHGAP9Q9BRR9 750 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 PACSIN1Q9BY11 444 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 OSBPL6Q9BZF3 934 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 RNF38Q9H0F5 515 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 THAP2Q9H0W7 228 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 DEF6Q9H4E7 631 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 SMOC1Q9H4F8 434 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms