RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CXorf38Q8TB03 319 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 ARNTL2Q8WYA1 636 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 NRBP2Q9NSY0 501 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 HACL1Q9UJ83 578 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 RGPD3A6NKT7 1758 aaPredicted RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 RGPD4Q7Z3J3 1758 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 SF3B1O75533 1304 aaKnown RBP eCLIP21.56■■□□□ 1.046e-6■■■■■ 75.8
CTCF-202ENST00000401394 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 EPHA3P29320 983 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 PMLP29590 882 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 TYK2P29597 1187 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 GABRB2P47870 512 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 FAM47CQ5HY64 1035 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 UGT2A3Q6UWM9 527 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 RBM44Q6ZP01 1051 aaKnown RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 TRIM42Q8IWZ5 723 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 SPATA6LQ8N4H0 392 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 PIP4K2CQ8TBX8 421 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 ZBED3Q96IU2 234 aaPredicted RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 FCRL3Q96P31 734 aaPredicted RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 FAM192AQ9GZU8 254 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 GPAMQ9HCL2 828 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 PREBQ9HCU5 417 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 SPDYE16A6NNV3 312 aaPredicted RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 HNRNPRO43390 633 aaKnown RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 SMIM18P0DKX4 95 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 DEUP1Q05D60 604 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 C6orf52Q5T4I8 152 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 XRRA1Q6P2D8 792 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 FAM131BQ86XD5 332 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 CDHR1Q96JP9 859 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 MRPL45Q9BRJ2 306 aaKnown RBP21.56■■□□□ 1.04
CTCF-202ENST00000401394 CENPKQ9BS16 269 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 DPEP3Q9H4B8 488 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 DTLQ9NZJ0 730 aa21.56■■□□□ 1.04
CTCF-202ENST00000401394 KCNK1O00180 336 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 CCNT2O60583 730 aaKnown RBP21.55■■□□□ 1.04
CTCF-202ENST00000401394 FKBP6O75344 327 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 RALBP11234 206 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 NUDT2P50583 147 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 SLC9A4Q6AI14 798 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 NIM1KQ8IY84 436 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 GRIN3AQ8TCU5 1115 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 C1orf21Q9H246 121 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 COPS7BQ9H9Q2 264 aaPredicted RBP21.55■■□□□ 1.04
CTCF-202ENST00000401394 IRF6O14896 467 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 LCP1P13796 627 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 HNRNPDQ14103 355 aaKnown RBP21.55■■□□□ 1.04
CTCF-202ENST00000401394 PDK1Q15118 436 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 FKBP1CQ5VVH2 108 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 OLFML1Q6UWY5 402 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 COPG2Q9UBF2 871 aa21.55■■□□□ 1.04
CTCF-202ENST00000401394 IGKV6D-21A0A0A0MT36 114 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 BCLAF3A2AJT9 711 aaKnown RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 COX4I1P13073 169 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 DPEP1P16444 411 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 XRCC1P18887 633 aaPredicted RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 SDC4P31431 198 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 MS4A2Q01362 244 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 SOWAHAQ2M3V2 549 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 PNPLA1Q8N8W4 532 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 ZSCAN18Q8TBC5 510 aaPredicted RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 KCTD15Q96SI1 283 aaPredicted RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 SOWAHBA6NEL2 793 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 B4GALT4O60513 344 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 RPL10P27635 214 aaKnown RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 PSMB4P28070 264 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 PCSK6P29122 969 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 ALDH1A3P47895 512 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 GLRBP48167 497 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 SCNN1BP51168 640 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 LSAMPQ13449 338 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 SLC10A6Q3KNW5 377 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 OLFML2BQ68BL8 750 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 ZBTB8OSQ8IWT0 167 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 GBA2Q9HCG7 927 aaPredicted RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 TBC1D30Q9Y2I9 924 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 PTPRFP10586 1907 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 TRPA1O75762 1119 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 MPSTP25325 297 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 DPP6P42658 865 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 THOP1P52888 689 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 ABCE1P61221 599 aaKnown RBP21.54■■□□□ 1.04
CTCF-202ENST00000401394 GLRA4Q5JXX5 417 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 TREML2Q5T2D2 321 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 MAP7D3Q8IWC1 876 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 LILRA2Q8N149 483 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 FBXW8Q8N3Y1 598 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 COLGALT1Q8NBJ5 622 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 ACTRT2Q8TDY3 377 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 GINS2Q9Y248 185 aa21.54■■□□□ 1.04
CTCF-202ENST00000401394 EVPLQ92817 2033 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 VILLO15195 856 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 BIRC5O15392 142 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 SERPINE1P05121 402 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 TFAP2AP05549 437 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 PDGFRBP09619 1106 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 AP3M2P53677 418 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 CDKL1Q00532 357 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 EFCAB12Q6NXP0 572 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms