RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 BRD8Q9H0E9 1235 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 ZBP1Q9H171 429 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 DONSONQ9NYP3 566 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 SAE1Q9UBE0 346 aaPredicted RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 ZNF638Q14966 1978 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 RASGRF2O14827 1237 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 PPP1R12AO14974 1030 aaPredicted RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 FGF10O15520 208 aaPredicted RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 EPHB3P54753 998 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TBX4P57082 545 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 GPS1Q13098 491 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 SEMA3BQ13214 749 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 EIF4EBP2Q13542 120 aaPredicted RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 PDK1Q15118 436 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TRIP13Q15645 432 aaPredicted RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 IZUMO3Q5VZ72 239 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TCEAL8Q8IYN2 117 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 PYROXD2Q8N2H3 581 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 GIPC2Q8TF65 315 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 ZNF473Q8WTR7 871 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 CASP10Q92851 521 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 CCT8L2Q96SF2 557 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 CRISPLD1Q9H336 500 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 OR12D3Q9UGF7 316 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TPX2Q9ULW0 747 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 DNALI1O14645 258 aaPredicted RBP18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 LPXNO60711 386 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 SOAT2O75908 522 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 ZDHHC11BP0C7U3 371 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 ATF6P18850 670 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 MX2P20592 715 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 AMPD1P23109 780 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 MMP13P45452 471 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 DPYSQ14117 519 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 PAFAH1B3Q15102 231 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 TRIP4Q15650 581 aaPredicted RBP18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 P3H1Q32P28 736 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 C10orf120Q5SQS8 335 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 NCBP2-AS2Q69YL0 99 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 ZC3H18Q86VM9 953 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 ATP6V0D2Q8N8Y2 350 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 GPR152Q8TDT2 470 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 TRMT2BQ96GJ1 504 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 EMILIN2Q9BXX0 1053 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 CATSPERBQ9H7T0 1116 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 PAK5Q9P286 719 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 MAGED2Q9UNF1 606 aaPredicted RBP18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 YIPF1Q9Y548 306 aa18.77■□□□□ 0.6
CCDC88C-203ENST00000389856 SHBGP04278 402 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 ADH1AP07327 375 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 DNAJB2P25686 324 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 CA8P35219 290 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 VPS41P49754 854 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 ITGA8P53708 1063 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 NRG1Q02297 640 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 MORF4L2Q15014 288 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 SLC45A4Q5BKX6 768 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 SNX30Q5VWJ9 437 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 TTC19Q6DKK2 380 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 NPNTQ6UXI9 565 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 TFB1MQ8WVM0 346 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 MYRFLQ96LU7 910 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 ZNF512Q96ME7 567 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 QKIQ96PU8 341 aaKnown RBP eCLIP18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 NACA2Q9H009 215 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 TRPM5Q9NZQ8 1165 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 MARCH2Q9P0N8 246 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 SFMBT1Q9UHJ3 866 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 SHOC2Q9UQ13 582 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 HBS1LQ9Y450 684 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 ASB3Q9Y575 518 aa18.76■□□□□ 0.59
CCDC88C-203ENST00000389856 CLUHO75153 1309 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 A0A087WUV0 522 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 C5orf60A6NFR6 353 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 E7EVH7 732 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 TP73O15350 636 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 TTC4O95801 387 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 MAGEA9P43362 315 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 UBE3AQ05086 875 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 RING1Q06587 406 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 EFEMP1Q12805 493 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 HEATR6Q6AI08 1181 aaKnown RBP18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 CCDC149Q6ZUS6 474 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 KLHL23Q8NBE8 558 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 RTP4Q96DX8 246 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 C1orf74Q96LT6 269 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 CCDC77Q9BR77 488 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 CDC42EP4Q9H3Q1 356 aaKnown RBP18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 CXXC1Q9P0U4 656 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 FAM169AQ9Y6X4 670 aa18.75■□□□□ 0.59
CCDC88C-203ENST00000389856 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 KCNN4O15554 427 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 MTSS1O43312 755 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 TLR5O60602 858 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 PAGE1O75459 146 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 KIAA0754O94854 1291 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 ABHD2P08910 425 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 ERCC2P18074 760 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 EPHB2P29323 1055 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms