RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 BTLAQ7Z6A9 289 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 LINC00523Q86TU6 105 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 LIX1LQ8IVB5 337 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 DCLK2Q8N568 766 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 CAPZA3Q96KX2 299 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 FAM96AQ9H5X1 160 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TIMMDC1Q9NPL8 285 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 ZNF112Q9UJU3 913 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 UTP11Q9Y3A2 253 aaKnown RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 PIAS3Q9Y6X2 628 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 VWDEQ8N2E2 1590 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 LRRD1A4D1F6 860 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MGAT4DA6NG13 374 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 DPM1O60762 260 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 GJA1P17302 382 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 CHRNA3P32297 505 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MLLT3P42568 568 aaPredicted RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 GEMP55040 296 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 BCAR1P56945 870 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 NIPAL4Q0D2K0 466 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 STX4Q12846 297 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 BMPR2Q13873 1038 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 DMC1Q14565 340 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 PDK1Q15118 436 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 LRRC24Q50LG9 513 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 SLC39A5Q6ZMH5 540 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 KDM7AQ6ZMT4 941 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 ILDR2Q71H61 639 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MARK2Q7KZI7 788 aaKnown RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 SETD3Q86TU7 594 aaPredicted RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 PSTKQ8IV42 348 aaKnown RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 NUP93Q8N1F7 819 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 JADE3Q92613 823 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TESCQ96BS2 214 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TRMT61AQ96FX7 289 aaKnown RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 HPDLQ96IR7 371 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TMX3Q96JJ7 454 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 FAM84BQ96KN1 310 aaPredicted RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 C11orf70Q9BRQ4 267 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 VCX3BQ9H321 246 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MARK1Q9P0L2 795 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 ZNHIT2Q9UHR6 403 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 PTPRJQ12913 1337 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TIAM1Q13009 1591 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 KRIT1O00522 736 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 PODXLO00592 558 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 FCHO1O14526 889 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MAP2K7O14733 419 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 KCNH1O95259 989 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 LGALS2P05162 132 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 SMIM10L2AP0DMW4 78 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 SMIM10L2BP0DMW5 78 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 NAMPTP43490 491 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 RFX3P48380 749 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 COPAP53621 1224 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MMRN1Q13201 1228 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 PDAP1Q13442 181 aaKnown RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 PDCD2Q16342 344 aaPredicted RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 KCTD19Q17RG1 926 aaPredicted RBP4.2□□□□□ -1.74
USH2A-202ENST00000366942 IRGCQ6NXR0 463 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MPZL3Q6UWV2 235 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 LYPD8Q6UX82 237 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 C4orf22Q6V702 233 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 C11orf96Q7Z7L8 435 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TICAM1Q8IUC6 712 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TMEM126BQ8IUX1 230 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 SYNPOQ8N3V7 929 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 DCAKDQ8WVC6 231 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 PNPLA2Q96AD5 504 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 ELMO2Q96JJ3 720 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 MAGEB18Q96M61 343 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 HS6ST2Q96MM7 605 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TMEM47Q9BQJ4 181 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 TRPV4Q9HBA0 871 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 CYP39A1Q9NYL5 469 aa4.2□□□□□ -1.74
USH2A-202ENST00000366942 A0A087X0T9 212 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CASTOR2A6NHX0 329 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SH2D7A6NKC9 451 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 TAF4O00268 1085 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 RAMP2O60895 175 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ADH1BP00325 375 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 LCP1P13796 627 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 KCNA2P16389 499 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ALAS2P22557 587 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 POU1F1P28069 291 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CD52P31358 61 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SNW1Q13573 536 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZMYND11Q15326 602 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CCDC183Q5T5S1 534 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FAM102AQ5T9C2 384 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 SPATA1Q5VX52 437 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CREB3L3Q68CJ9 461 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ARHGAP11AQ6P4F7 1023 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 C11orf57Q6ZUT1 292 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 ANO5Q75V66 913 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MYO1HQ8N1T3 1032 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.19□□□□□ -1.74
USH2A-202ENST00000366942 TTLQ8NG68 377 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CLMNQ96JQ2 1002 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 LRGUKQ96M69 825 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms