RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 GANCQ8TET4 914 aa14.44□□□□□ -0.1
VPS29-201ENST00000360579 FAXDC2Q96IV6 333 aa14.44□□□□□ -0.1
VPS29-201ENST00000360579 FCRL3Q96P31 734 aaPredicted RBP14.44□□□□□ -0.1
VPS29-201ENST00000360579 KCTD10Q9H3F6 313 aa14.44□□□□□ -0.1
VPS29-201ENST00000360579 APOBEC3GQ9HC16 384 aaKnown RBP14.44□□□□□ -0.1
VPS29-201ENST00000360579 GDF3Q9NR23 364 aa14.44□□□□□ -0.1
VPS29-201ENST00000360579 EXOC1Q9NV70 894 aa14.44□□□□□ -0.1
VPS29-201ENST00000360579 TPX2Q9ULW0 747 aaKnown RBP14.44□□□□□ -0.1
VPS29-201ENST00000360579 COL5A1P20908 1838 aaPredicted RBP14.43□□□□□ -0.1
VPS29-201ENST00000360579 LRRC72A6NJI9 287 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 TLX3O43711 291 aaPredicted RBP14.43□□□□□ -0.1
VPS29-201ENST00000360579 ZBED1O96006 694 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 POLR2EP19388 210 aaKnown RBP14.43□□□□□ -0.1
VPS29-201ENST00000360579 AFMP43652 599 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 ST8SIA6P61647 398 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 ENPEPQ07075 957 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 STK4Q13043 487 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 TARDBPQ13148 414 aaKnown RBP eCLIP14.43□□□□□ -0.1
VPS29-201ENST00000360579 ILKQ13418 452 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 ZNF394Q53GI3 561 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 C1orf220Q5T0J3 134 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 MPP7Q5T2T1 576 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 PM20D1Q6GTS8 502 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 INTS8Q75QN2 995 aaKnown RBP14.43□□□□□ -0.1
VPS29-201ENST00000360579 GATAD2AQ86YP4 633 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 FMNL3Q8IVF7 1028 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 CEP57L1Q8IYX8 460 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 KIAA0895Q8NCT3 520 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 TAS1R2Q8TE23 839 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 SAP25Q8TEE9 199 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 RNF139Q8WU17 664 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 RSPH9Q9H1X1 276 aaPredicted RBP14.43□□□□□ -0.1
VPS29-201ENST00000360579 PABPC3Q9H361 631 aaKnown RBP14.43□□□□□ -0.1
VPS29-201ENST00000360579 OCEL1Q9H607 264 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 FBXL12Q9NXK8 326 aa14.43□□□□□ -0.1
VPS29-201ENST00000360579 ZNF462Q96JM2 2506 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.42□□□□□ -0.1
VPS29-201ENST00000360579 FAM47DPA6NHR8 397 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 CALUO43852 315 aaPredicted RBP14.42□□□□□ -0.1
VPS29-201ENST00000360579 PLA2G2AP14555 144 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 CD38P28907 300 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 GCLMP48507 274 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 ACADVLP49748 655 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 TKTL1P51854 596 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 SLC45A4Q5BKX6 768 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 HES3Q5TGS1 186 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 ARHGAP17Q68EM7 881 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 GPR155Q7Z3F1 870 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 CACTIN-AS1Q8N1I8 211 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 OXR1Q8N573 874 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 ANKRD52Q8NB46 1076 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 FGF11Q92914 225 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 TMEM176AQ96HP8 235 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 SLC6A18Q96N87 628 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 AASDHPPTQ9NRN7 309 aa14.42□□□□□ -0.1
VPS29-201ENST00000360579 NUMA1Q14980 2115 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 IRAK2O43187 625 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 ASLP04424 464 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 KRT13P13646 458 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 PDIA4P13667 645 aaKnown RBP14.41□□□□□ -0.1
VPS29-201ENST00000360579 EPHA8P29322 1005 aaPredicted RBP14.41□□□□□ -0.1
VPS29-201ENST00000360579 ACTN2P35609 894 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 GALCP54803 685 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 DNAJC3Q13217 504 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 FBXL19Q6PCT2 694 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 NCEH1Q6PIU2 408 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 EID2Q8N6I1 236 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 KDM1BQ8NB78 822 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 OR2T34Q8NGX1 318 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 IPO9Q96P70 1041 aaKnown RBP14.41□□□□□ -0.1
VPS29-201ENST00000360579 ULBP1Q9BZM6 244 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 LRRC4Q9HBW1 653 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 FZD4Q9ULV1 537 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 TRAF3IP3Q9Y228 551 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 RAI2Q9Y5P3 530 aa14.41□□□□□ -0.1
VPS29-201ENST00000360579 TMEM131Q92545 1883 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 PTPRQQ9UMZ3 2332 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 KLRC4O43908 158 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 GTF2H1P32780 548 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 CCR5P51681 352 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 PPP3CAQ08209 521 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 ARID5BQ14865 1188 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 CST6Q15828 149 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 HNRNPA1L2Q32P51 320 aaKnown RBP14.4□□□□□ -0.1
VPS29-201ENST00000360579 PRAMEF14Q5SWL7 426 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 ZNF843Q8N446 348 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 SLC4A11Q8NBS3 891 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 TSC1Q92574 1164 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 OMDQ99983 421 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 ERVMER34-1Q9H9K5 563 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 TMEM8AQ9HCN3 771 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 CISHQ9NSE2 258 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 ABCC13Q9NSE7 274 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 ADAMTS1Q9UHI8 967 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 SFMBT1Q9UHJ3 866 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 MAST4O15021 2626 aa14.4□□□□□ -0.1
VPS29-201ENST00000360579 MUC22E2RYF6 1773 aaPredicted RBP14.39□□□□□ -0.11
VPS29-201ENST00000360579 TYW5A2RUC4 315 aaKnown RBP14.39□□□□□ -0.11
VPS29-201ENST00000360579 CBX4O00257 560 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 XPO1O14980 1071 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms