RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PCED1BQ96HM7 432 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 AP5M1Q9H0R1 490 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 LNPEPQ9UIQ6 1025 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 STAP1Q9ULZ2 295 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.89■□□□□ 0.13
UPF3B-202ENST00000345865 EEF2KO00418 725 aaKnown RBP15.89■□□□□ 0.13
UPF3B-202ENST00000345865 OPHN1O60890 802 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 FAM200BP0CF97 657 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 CCND1P24385 295 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 DAOAP59103 153 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 CHI3L2Q15782 390 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 CES3Q6UWW8 571 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 TIFABQ6ZNK6 161 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 HACE1Q8IYU2 909 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 PTCD3Q96EY7 689 aaKnown RBP15.89■□□□□ 0.13
UPF3B-202ENST00000345865 RHOBTB2Q9BYZ6 727 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 SYBUQ9NX95 663 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 ST3GAL5Q9UNP4 418 aa15.89■□□□□ 0.13
UPF3B-202ENST00000345865 DNAJC6O75061 913 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 ALDOAP04075 364 aaKnown RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 USP17L7P0C7H9 530 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 ERCC2P18074 760 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 PTPN4P29074 926 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 SARNPP82979 210 aaKnown RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 OCRLQ01968 901 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 SEMA3BQ13214 749 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 CRYMQ14894 314 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 PDK1Q15118 436 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 CST9Q5W186 159 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 MARK2Q7KZI7 788 aaKnown RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 FAM35AQ86V20 835 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 STKLD1Q8NE28 680 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 E2F7Q96AV8 911 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 EIF2B3Q9NR50 452 aaKnown RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 NKX1-2Q9UD57 310 aaPredicted RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 MTO1Q9Y2Z2 717 aaKnown RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 CDY2AQ9Y6F7 541 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 SF3B1O75533 1304 aaKnown RBP eCLIP15.88■□□□□ 0.135e-6■■■■■ 61.2
UPF3B-202ENST00000345865 AP1G2O75843 785 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 HAUS5O94927 633 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 IGHA2P01877 340 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 SERPINB9P50453 376 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 IRX4P78413 519 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 TMPRSS15P98073 1019 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 C16orf46Q6P387 395 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 PACS1Q6VY07 963 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 ZCCHC23Q6ZST2 131 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 BHLHA9Q7RTU4 235 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 ALYREFQ86V81 257 aaKnown RBP15.88■□□□□ 0.13
UPF3B-202ENST00000345865 NPWQ8N729 165 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 APBB2Q92870 758 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 PGBD4Q96DM1 585 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 SYT15Q9BQS2 421 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 DNAI2Q9GZS0 605 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 TLE6Q9H808 572 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 FAM105AQ9NUU6 356 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 EMCNQ9ULC0 261 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 SNX10Q9Y5X0 201 aa15.88■□□□□ 0.13
UPF3B-202ENST00000345865 HHLA1C9JL84 531 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 BPGMP07738 259 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 GMPRP36959 345 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 CCDC91Q7Z6B0 441 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 NUDCD3Q8IVD9 361 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 C7orf26Q96N11 449 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 KATNAL1Q9BW62 490 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 HTTP42858 3142 aa15.87■□□□□ 0.13
UPF3B-202ENST00000345865 CAPN9O14815 690 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 USP12O75317 370 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 CTSHP09668 335 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 NCAM1P13591 858 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 RASSF2P50749 326 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 MRPS6P82932 125 aaKnown RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 RAB41Q5JT25 222 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 TLDC1Q6P9B6 456 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 PID1Q7Z2X4 250 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 ARID3BQ8IVW6 561 aaPredicted RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 TRPV1Q8NER1 839 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 FCRL3Q96P31 734 aaPredicted RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 AGAP3Q96P47 875 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 CADM1Q9BY67 442 aaKnown RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 NMUR2Q9GZQ4 415 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 PRDM16Q9HAZ2 1276 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 XPNPEP3Q9NQH7 507 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 ARMCX1Q9P291 453 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 IGSF9Q9P2J2 1179 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 MARCOQ9UEW3 520 aaPredicted RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 Q9Y3F1 56 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 SHROOM3Q8TF72 1996 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 I3L4J1 428 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 TPP1O14773 563 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 PPP1R12AO14974 1030 aaPredicted RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 PEX11AO75192 247 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 SNNO75324 88 aaPredicted RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 WFS1O76024 890 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 F7P08709 466 aaPredicted RBP15.86■□□□□ 0.13
UPF3B-202ENST00000345865 KITP10721 976 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 GNAT1P11488 350 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 PGAM1P18669 254 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 PTPN3P26045 913 aa15.86■□□□□ 0.13
UPF3B-202ENST00000345865 ZBTB16Q05516 673 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms