RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF23P17027 643 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ZNF26P17031 533 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 HOXD12P35452 270 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ETFBP38117 255 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ABCE1P61221 599 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 PRAMEP78395 509 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 USP41Q3LFD5 358 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 MGAT5BQ3V5L5 792 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CASC4Q6P4E1 433 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CES3Q6UWW8 571 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CMC1Q7Z7K0 106 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 TRIM50Q86XT4 487 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 LZTR1Q8N653 840 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 NETO2Q8NC67 525 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 MAML3Q96JK9 1138 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 SIGLEC10Q96LC7 697 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CAMKK2Q96RR4 588 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ACO2Q99798 780 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 RTKNQ9BST9 563 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 PLGRKTQ9HBL7 147 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM98Q9Y2Y6 226 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 MRPL11Q9Y3B7 192 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CHADO15335 359 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 GRAP2O75791 330 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CD19P15391 556 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 HALP42357 657 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 MAPK10P53779 464 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 ATP1A4Q13733 1029 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 HADHQ16836 314 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 BSPRYQ5W0U4 402 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 THNSL1Q8IYQ7 743 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM102Q8N9M5 508 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 ADCY4Q8NFM4 1077 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM79Q9BSE2 394 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 SLC4A5Q9BY07 1137 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 PCDHAC1Q9H158 963 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 SLC38A7Q9NVC3 462 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 ARHGAP28Q9P2N2 729 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 SIPA1L1O43166 1804 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 ARHGEF37A1IGU5 675 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 FBP2O00757 339 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 LSM1O15116 133 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CSDE1O75534 798 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 FUCA1P04066 466 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 PIK3R1P27986 724 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 MYL6P60660 151 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 DCAF6Q58WW2 860 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 ZNF362Q5T0B9 420 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CCDC80Q76M96 950 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CHERPQ8IWX8 916 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 PQLC3Q8N755 202 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 LRTOMTQ8WZ04 291 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 PPP1R14BQ96C90 147 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 TMA16Q96EY4 203 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CPXM1Q96SM3 734 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 GLIS2Q9BZE0 524 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 IMPG2Q9BZV3 1241 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 TDRD3Q9H7E2 651 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CISHQ9NSE2 258 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 OLAHQ9NV23 265 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 DNAJC28Q9NX36 388 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 USP18Q9UMW8 372 aa13.8□□□□□ -0.2
CCDC88C-201ENST00000331194 CLRN2A0PK11 232 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 WDR27A2RRH5 827 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 FAM159BA6NKW6 160 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 EDN1P05305 212 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 NAT1P18440 290 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 CD247P20963 164 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 RAP1GAPP47736 663 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 NOMO1Q15155 1222 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 C15orf59Q2T9L4 293 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 MAP7D1Q3KQU3 841 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 PIGGQ5H8A4 983 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 ZNF534Q76KX8 674 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 NANOGNBQ7Z5D8 188 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 C4orf19Q8IY42 314 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 PLD6Q8N2A8 252 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 NIPA2Q8N8Q9 360 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 FAM110BQ8TC76 370 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TARS2Q9BW92 718 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 MAGEB5Q9BZ81 275 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 EHMT1Q9H9B1 1298 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 THEGQ9P2T0 379 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 HES2Q9Y543 173 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM247A6NEH6 219 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TRDMT1O14717 391 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 RGL2O15211 777 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 H6PDO95479 791 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 HMGCRP04035 888 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 GARTP22102 1010 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 PHKA2P46019 1235 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 ALDH3B2P48448 385 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 GTF2A2P52657 109 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 ZNF132P52740 706 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 PDAP1Q13442 181 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TAZQ16635 292 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 BNC2Q6ZN30 1099 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 DPH6Q7L8W6 267 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 KYQ8NBH2 561 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM143Q96AN5 459 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms