RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CYP2A7P20853 494 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 MRPS22P82650 360 aaKnown RBP14.16□□□□□ -0.14
CSPG4-201ENST00000308508 C5orf22Q49AR2 442 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF554Q86TJ5 538 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 FBXO39Q8N4B4 442 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 OR56A4Q8NGH8 313 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 PHF21BQ96EK2 531 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 TIMMDC1Q9NPL8 285 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 CD151P48509 253 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 CDC42P60953 191 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 EMC1Q8N766 993 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 SAMD9Q5K651 1589 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 DCXO43602 365 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 SEMA3DO95025 777 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 RPL5P46777 297 aaKnown RBP14.16□□□□□ -0.14
CSPG4-201ENST00000308508 NPY2RP49146 381 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 ALDH9A1P49189 494 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 PDK3Q15120 406 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 HAVCR1Q96D42 359 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 MED8Q96G25 268 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 DPP3Q9NY33 737 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 MTMR4Q9NYA4 1195 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 NR2C2P49116 596 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF844Q08AG5 666 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 SLC15A2Q16348 729 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 TTC23Q5W5X9 447 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 BICRALQ6AI39 1079 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 SPOCD1Q6ZMY3 1216 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 FOXN3O00409 490 aaPredicted RBP14.15□□□□□ -0.14
CSPG4-201ENST00000308508 SGPL1O95470 568 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 PTDSS1P48651 473 aaKnown RBP14.15□□□□□ -0.14
CSPG4-201ENST00000308508 HSF2Q03933 536 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 GLRA4Q5JXX5 417 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 STOX1Q6ZVD7 989 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 B3GALT6Q96L58 329 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 KLHL32Q96NJ5 620 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 RIT2Q99578 217 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 MID1IP1Q9NPA3 183 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 PFDN2Q9UHV9 154 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 TMCC2O75069 709 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 ARHGAP15Q53QZ3 475 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 GLB1LQ6UWU2 654 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 COX4I2Q96KJ9 171 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 RGS14O43566 566 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 PGAM1P18669 254 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 HERVK_113P62684 666 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 EPHA10Q5JZY3 1008 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 FAM220AQ7Z4H9 259 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 MAP3K14Q99558 947 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 JMJD4Q9H9V9 463 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 CORO1CQ9ULV4 474 aaPredicted RBP14.15□□□□□ -0.14
CSPG4-201ENST00000308508 PCDHGA4Q9Y5G9 962 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 TNK2Q07912 1038 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 PERM1Q5SV97 790 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 RASSF6Q6ZTQ3 369 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 MAGEE2Q8TD90 523 aaPredicted RBP14.15□□□□□ -0.14
CSPG4-201ENST00000308508 TMEM216Q9P0N5 145 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 ARMCX1Q9P291 453 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 FLT1P17948 1338 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 EFCAB6Q5THR3 1501 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 GP5P40197 560 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 TCEAL5Q5H9L2 206 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 KCNMB4Q86W47 210 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 SNX32Q86XE0 403 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 POU5F2Q8N7G0 328 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 KAT2BQ92831 832 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 AK5Q9Y6K8 562 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 CDC42BPBQ9Y5S2 1711 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 LSM1O15116 133 aaKnown RBP14.15□□□□□ -0.14
CSPG4-201ENST00000308508 GPR15P49685 360 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 BCAT1P54687 386 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 FAM187BQ17R55 369 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 SLC45A4Q5BKX6 768 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 OLFML2AQ68BL7 652 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 DENND5AQ6IQ26 1287 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 MTSS1LQ765P7 747 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 FAM172AQ8WUF8 416 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 ZHX1-C8orf76Q96EF9 292 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 RPRD1AQ96P16 312 aaPredicted RBP14.15□□□□□ -0.14
CSPG4-201ENST00000308508 TEX13BQ9BXU2 312 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 DSN1Q9H410 356 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 SAMD9LQ8IVG5 1584 aa14.15□□□□□ -0.14
CSPG4-201ENST00000308508 CCNT2O60583 730 aaKnown RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 FICDQ9BVA6 458 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 SEMA4AQ9H3S1 761 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 ERGIC3Q9Y282 383 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 USP42Q9H9J4 1324 aaKnown RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 A0A087X1B8 175 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 FAM205CA6NFA0 338 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 LIN7AO14910 233 aaPredicted RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 KPNA6O60684 536 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 CBX6O95503 412 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 IGKV5-2P06315 115 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 PHACTR4Q8IZ21 702 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 USP7Q93009 1102 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 SH2D3AQ9BRG2 576 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 ATXN10Q9UBB4 475 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 RPS6KA6Q9UK32 745 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 IRAK3Q9Y616 596 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 AREL1O15033 823 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms