RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 DNALI1O14645 258 aaPredicted RBP18.96■□□□□ 0.63
PCDH1-201ENST00000287008 B4GALT5O43286 388 aa18.96■□□□□ 0.63
PCDH1-201ENST00000287008 PFDN1O60925 122 aa18.96■□□□□ 0.63
PCDH1-201ENST00000287008 GJB6O95452 261 aa18.96■□□□□ 0.63
PCDH1-201ENST00000287008 TJAP1Q5JTD0 557 aa18.96■□□□□ 0.63
PCDH1-201ENST00000287008 SLC28A3Q9HAS3 691 aa18.96■□□□□ 0.63
PCDH1-201ENST00000287008 BMPR2Q13873 1038 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 LONP2Q86WA8 852 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 PPP1R16AQ96I34 528 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 LOC102724159A0A0B4J2E5 919 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 TNFSF9P41273 254 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 EVX2Q03828 476 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 PWP2Q15269 919 aaKnown RBP18.95■□□□□ 0.62
PCDH1-201ENST00000287008 MTSS1LQ765P7 747 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 SLC22A9Q8IVM8 553 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 RGL4Q8IZJ4 473 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 NSL1Q96IY1 281 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 RGS18Q9NS28 235 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 AHSPQ9NZD4 102 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 LRRC10BA6NIK2 292 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 C16orf96A6NNT2 1141 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 DUSP11O75319 330 aaKnown RBP18.95■□□□□ 0.62
PCDH1-201ENST00000287008 PRKAA1Q13131 559 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 KCNMB4Q86W47 210 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 KRT78Q8N1N4 520 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 SPATA20Q8TB22 786 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 APBB2Q92870 758 aa18.95■□□□□ 0.62
PCDH1-201ENST00000287008 HPGDP15428 266 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 PRKCIP41743 596 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 SETMARQ53H47 684 aaPredicted RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 RAP1GAP2Q684P5 730 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 USP45Q70EL2 814 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 OR5B17Q8NGF7 314 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 RIPK3Q9Y572 518 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 MRPL42Q9Y6G3 142 aaKnown RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 OR6C75A6NL08 312 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 PSMD12O00232 456 aaPredicted RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 ZW10O43264 779 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 HOXB8P17481 243 aaPredicted RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 CPA2P48052 419 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 IRAK1P51617 712 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 DAB2P98082 770 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 RRP1BQ14684 758 aaKnown RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 CYTH1Q15438 398 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 PARP9Q8IXQ6 854 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 CD99L2Q8TCZ2 262 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 MYLPFQ96A32 169 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 FGRP09769 529 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 RARAP10276 462 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 MGAT1P26572 445 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 SMAD3P84022 425 aaKnown RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 ACTN3Q08043 901 aaPredicted RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 NR6A1Q15406 480 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 TRIP10Q15642 601 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 C15orf59Q2T9L4 293 aaPredicted RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 LRRC8BQ6P9F7 803 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 SERPINA13PQ6UXR4 307 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 ZSWIM2Q8NEG5 633 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 WDR48Q8TAF3 677 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 CAMKK2Q96RR4 588 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 GPR20Q99678 358 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 ASTN1O14525 1302 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 COL1A2P08123 1366 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 SCAMP3O14828 347 aaKnown RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 RAD51BO15315 384 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 RPN2P04844 631 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 PCNAP12004 261 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 MAPK8P45983 427 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 NUDT2P50583 147 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 SNRPD1P62314 119 aaKnown RBP18.94■□□□□ 0.62
PCDH1-201ENST00000287008 PDPK2PQ6A1A2 396 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 TADA1Q96BN2 335 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 EFCAB1Q9HAE3 211 aa18.94■□□□□ 0.62
PCDH1-201ENST00000287008 SPATA31C1P0DKV0 1188 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 LRRC36Q1X8D7 754 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 ABHD15Q6UXT9 468 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 SLAIN1Q8ND83 568 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 CASP10Q92851 521 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 OR1D2P34982 312 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 CCNG1P51959 295 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 UGCGQ16739 394 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 PHF21AQ96BD5 680 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 ZFP42Q96MM3 310 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 TSPAN18Q96SJ8 248 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 ACOX2Q99424 681 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 OMDQ99983 421 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 NDEL1Q9GZM8 345 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 DNPEPQ9ULA0 475 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 PHTF1Q9UMS5 762 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 V9GYQ6 96 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 NT5C1B-RDH14C9J2C7 533 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 TBC1D4O60343 1298 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 CXCL14O95715 111 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 MMP3P08254 477 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 RBL1P28749 1068 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 P3H2Q8IVL5 708 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 SHC3Q92529 594 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 MIEF1Q9NQG6 463 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 HPS4Q9NQG7 708 aa18.93■□□□□ 0.62
PCDH1-201ENST00000287008 SLC27A5Q9Y2P5 690 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms