RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PDE2AO00408 941 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ENO2P09104 434 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CDC42P60953 191 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NFE2L1Q14494 772 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 EZH2Q15910 746 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 LCN1P1Q5VSP4 162 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 VAT1Q99536 393 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RAB6BQ9NRW1 208 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NIP7Q9Y221 180 aaKnown RBP eCLIP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ROBO3Q96MS0 1386 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ALOX15BO15296 676 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CAPN15O75808 1086 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ANXA9O76027 345 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MYL3P08590 195 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ITGA2P17301 1181 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PON1P27169 355 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PHKA1P46020 1223 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 OVGP1Q12889 678 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CCDC85BQ15834 202 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MED30Q96HR3 178 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SMPD3Q9NY59 655 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MST1RQ04912 1400 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 C5orf58C9J3I9 102 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 HDAC3O15379 428 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TRIM3O75382 744 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RARBP10826 455 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FAUP35544 74 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 STAT3P40763 770 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RPL21P46778 160 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ATP6AP1LQ52LC2 224 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ARHGAP17Q68EM7 881 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 C9orf43Q8TAL5 461 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SPATA18Q8TC71 538 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 IGDCC4Q8TDY8 1250 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CENPNQ96H22 339 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF570Q96NI8 536 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SLC22A4Q9H015 551 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TDRKHQ9Y2W6 561 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MFHAS1Q9Y4C4 1052 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 UBAP1LF5GYI3 381 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FBP2O00757 339 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 HMBSP08397 361 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CSE1LP55060 971 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SMIM11AP58511 58 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF347Q96SE7 839 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PUS7LQ9H0K6 701 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CDH22Q9UJ99 828 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 GPR75-ASB3A0A0A6YYF3 556 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 A0A1W2PQ72 361 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 AQP12BA6NM10 295 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 H3BMM5 538 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF263O14978 683 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 KCNN4O15554 427 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PTTG1O95997 202 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PGAM1P18669 254 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 QARSP47897 775 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 AKR1D1P51857 326 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PSME3P61289 254 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SLC9A4Q6AI14 798 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 KLHDC10Q6PID8 442 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 NSMFQ6X4W1 530 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 USP43Q70EL4 1123 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SLCO6A1Q86UG4 719 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 AQP12AQ8IXF9 295 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TCP10LQ8TDR4 215 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RBM4BQ9BQ04 359 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RBM4Q9BWF3 364 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SLAIN2Q9P270 581 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MLXQ9UH92 298 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ASB3Q9Y575 518 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ADGRB3O60242 1522 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FAM205AQ6ZU69 1335 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 A0A087X1B8 175 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CLRN2A0PK11 232 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 KCNK1O00180 336 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PSMD12O00232 456 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MDM4O15151 490 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CLIC2O15247 247 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FOXN1O15353 648 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MRPS14O60783 128 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ETS1P14921 441 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ADRA1DP25100 572 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RPA1P27694 616 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SDC2P34741 201 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TRIM23P36406 574 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CPA2P48052 419 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MRPS22P82650 360 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 NFYCQ13952 458 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 VWA5B1Q5TIE3 1220 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FAM91A1Q658Y4 838 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 LIN54Q6MZP7 749 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ATG14Q6ZNE5 492 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SNX32Q86XE0 403 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FAR1Q8WVX9 515 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CENPIQ92674 756 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MARCOQ9UEW3 520 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PEX11AO75192 247 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RFX8Q6ZV50 586 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RASAL3Q86YV0 1011 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms