RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FSBPO95073 299 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 SEMA4FO95754 770 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 RPL13P26373 211 aaKnown RBP20.25■□□□□ 0.83
CLN3-262ENST00000637699 CYP4F3Q08477 520 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 ADAM9Q13443 819 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 NFIL3Q16649 462 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 ARHGAP17Q68EM7 881 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 PM20D1Q6GTS8 502 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 TTC39CQ8N584 583 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 WFIKKN2Q8TEU8 576 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 RNF139Q8WU17 664 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 EDEM1Q92611 657 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 TMA16Q96EY4 203 aaKnown RBP20.25■□□□□ 0.83
CLN3-262ENST00000637699 BTBD1Q9H0C5 482 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 OLA1Q9NTK5 396 aaKnown RBP20.25■□□□□ 0.83
CLN3-262ENST00000637699 TNFSF14O43557 240 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 DNTTP04053 509 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 MYL1P05976 194 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 PRR29P0C7W0 189 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 RPS14P62263 151 aaKnown RBP20.24■□□□□ 0.83
CLN3-262ENST00000637699 PDE4CQ08493 712 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 PKP1Q13835 747 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 GOLGA7BQ2TAP0 167 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 BHLHA9Q7RTU4 235 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 ADIPOR2Q86V24 386 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 GALNT15Q8N3T1 639 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 TATDN2Q93075 761 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 SNX21Q969T3 373 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 CCDC47Q96A33 483 aaKnown RBP20.24■□□□□ 0.83
CLN3-262ENST00000637699 EEF2KMTQ96G04 330 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 LRRC4Q9HBW1 653 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 PRSS16Q9NQE7 514 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 DKK4Q9UBT3 224 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 USP25Q9UHP3 1055 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 GGA2Q9UJY4 613 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 HBS1LQ9Y450 684 aaKnown RBP20.24■□□□□ 0.83
CLN3-262ENST00000637699 TMEM131Q92545 1883 aa20.24■□□□□ 0.83
CLN3-262ENST00000637699 H0Y8X5 98 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 RHOBTB3O94955 611 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 HSP90AA1P07900 732 aaKnown RBP20.23■□□□□ 0.83
CLN3-262ENST00000637699 PABPC1P11940 636 aaKnown RBP20.23■□□□□ 0.83
CLN3-262ENST00000637699 CMA1P23946 247 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 CD27P26842 260 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 GTF2H1P32780 548 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 GRK6P43250 576 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 GRIA4P48058 902 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 IL9RQ01113 521 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 ENPEPQ07075 957 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 PTPRNQ16849 979 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 KCNT1Q5JUK3 1230 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 ADGRF1Q5T601 910 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 ADAT2Q7Z6V5 191 aaKnown RBP20.23■□□□□ 0.83
CLN3-262ENST00000637699 ZC3H3Q8IXZ2 948 aaKnown RBP20.23■□□□□ 0.83
CLN3-262ENST00000637699 FBXL13Q8NEE6 735 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 IGSF8Q969P0 613 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 IPO9Q96P70 1041 aaKnown RBP20.23■□□□□ 0.83
CLN3-262ENST00000637699 OSGEPQ9NPF4 335 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 SCUBE2Q9NQ36 999 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 RAB20Q9NX57 234 aa20.23■□□□□ 0.83
CLN3-262ENST00000637699 GCN1Q92616 2671 aaKnown RBP20.22■□□□□ 0.83
CLN3-262ENST00000637699 BPTFQ12830 3046 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 XPO1O14980 1071 aaKnown RBP20.22■□□□□ 0.83
CLN3-262ENST00000637699 MXI1P50539 228 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 CCT8P50990 548 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 SGSHP51688 502 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 ZBTB16Q05516 673 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 ADIGQ0VDE8 80 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 BSPRYQ5W0U4 402 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 MBLAC2Q68D91 279 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 AHI1Q8N157 1196 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 FAXDC2Q96IV6 333 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 BBC3Q96PG8 261 aaPredicted RBP20.22■□□□□ 0.83
CLN3-262ENST00000637699 TSPAN16Q9UKR8 245 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 HPSEQ9Y251 543 aa20.22■□□□□ 0.83
CLN3-262ENST00000637699 ASXL3Q9C0F0 2248 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 YJEFN3A6XGL0 299 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 E7ENQ6 273 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 MSI1O43347 362 aaKnown RBP20.21■□□□□ 0.83
CLN3-262ENST00000637699 ATP5BP06576 529 aaKnown RBP20.21■□□□□ 0.83
CLN3-262ENST00000637699 DLDP09622 509 aaKnown RBP20.21■□□□□ 0.83
CLN3-262ENST00000637699 BCAT1P54687 386 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 ZNF445P59923 1031 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 CAMK2BQ13554 666 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 TTC31Q49AM3 519 aaPredicted RBP20.21■□□□□ 0.83
CLN3-262ENST00000637699 DHRS13Q6UX07 377 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 KIAA0907Q7Z7F0 614 aaPredicted RBP20.21■□□□□ 0.83
CLN3-262ENST00000637699 GUF1Q8N442 669 aaKnown RBP20.21■□□□□ 0.83
CLN3-262ENST00000637699 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.21■□□□□ 0.83
CLN3-262ENST00000637699 UBA3Q8TBC4 463 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 GANCQ8TET4 914 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 MTG2Q9H4K7 406 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 FBRSQ9HAH7 460 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 SGK2Q9HBY8 427 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 HESX1Q9UBX0 185 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 STOML2Q9UJZ1 356 aa20.21■□□□□ 0.83
CLN3-262ENST00000637699 FAM47DPA6NHR8 397 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 PCDHGA12O60330 932 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 TBL1XO60907 577 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 C7P10643 843 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 POLR2EP19388 210 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms