RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 FBXO25Q8TCJ0 367 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 CASP10Q92851 521 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 RNF34Q969K3 372 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 PSMG2Q969U7 264 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 BTN2A3PQ96KV6 586 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 TMEM121Q9BTD3 319 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 TXLNGYQ9BZA5 131 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 CATSPERBQ9H7T0 1116 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 NMUR1Q9HB89 426 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 FAM53CQ9NYF3 392 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 DTLQ9NZJ0 730 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 PAK5Q9P286 719 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 OR12D3Q9UGF7 316 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 SLC12A6Q9UHW9 1150 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 HPCAL4Q9UM19 191 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 INSL5Q9Y5Q6 135 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 CHD5Q8TDI0 1954 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 GOLGA6BA6NDN3 693 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 WASH4PA8MWX3 477 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 PRRG1O14668 218 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 EIF3HO15372 352 aaKnown RBP eCLIP10.92□□□□□ -0.66
CLN3-248ENST00000636355 TLR5O60602 858 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 LATS1O95835 1130 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 POU2F2P09086 479 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 RARGP13631 454 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 BMPR1AP36894 532 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 MAGEA6P43360 314 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 RABGGTBP53611 331 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 PLTPP55058 493 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 EIF3BP55884 814 aaKnown RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 MRPS25P82663 173 aaKnown RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 RBM10P98175 930 aaKnown RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 IFRD2Q12894 506 aaPredicted RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 PRKD1Q15139 912 aaPredicted RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 LLGL1Q15334 1064 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 IZUMO3Q5VZ72 239 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 HIBCHQ6NVY1 386 aaPredicted RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 PPP1R21Q6ZMI0 780 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 TRMT10CQ7L0Y3 403 aaKnown RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 UNC45BQ8IWX7 931 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 KRT222Q8N1A0 295 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 ZCCHC9Q8N567 271 aaKnown RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 ATP6V0D2Q8N8Y2 350 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 ADAM32Q8TC27 787 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 PLD4Q96BZ4 506 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 TBC1D31Q96DN5 1066 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 FCRL2Q96LA5 508 aaPredicted RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 RUFY1Q96T51 708 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 VAT1Q99536 393 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 EMILIN2Q9BXX0 1053 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 TRIM31Q9BZY9 425 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 OSER1Q9NX31 292 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 MARCH2Q9P0N8 246 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 CXXC1Q9P0U4 656 aaPredicted RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 PPARGC1AQ9UBK2 798 aaKnown RBP10.92□□□□□ -0.66
CLN3-248ENST00000636355 DNMT3LQ9UJW3 386 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 NEU3Q9UQ49 428 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 SNX24Q9Y343 169 aa10.92□□□□□ -0.66
CLN3-248ENST00000636355 MKI67P46013 3256 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 IGLV3-10A0A075B6K4 115 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 SYNJ2BP-COX16A0A087WUM0 186 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 C5orf60A6NFR6 353 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 H7C0C1 242 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 I6L893 689 aaPredicted RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 C2CD2LO14523 706 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 CHADO15335 359 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TP73O15350 636 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TEX28O15482 410 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 CREB3O43889 395 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 MFSD11O43934 449 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 OPHN1O60890 802 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 PAGE1O75459 146 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 GCATO75600 419 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 SASH3O75995 380 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 LRIG2O94898 1065 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 FGF19O95750 216 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 NUDT17P0C025 328 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 HMGA1P17096 107 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 HOXA9P31269 272 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 CTNNB1P35222 781 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 ATP5OP48047 213 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TBX4P57082 545 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 COG7P83436 770 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 PABPC1LQ4VXU2 614 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 HSP90B2PQ58FF3 399 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 C10orf120Q5SQS8 335 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 RNASEH2BQ5TBB1 312 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 SDHAF4Q5VUM1 108 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 HEATR6Q6AI08 1181 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 DARS2Q6PI48 645 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 TMCO2Q7Z6W1 182 aaPredicted RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 DDX42Q86XP3 938 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLN3-248ENST00000636355 PPIL6Q8IXY8 311 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 PYROXD2Q8N2H3 581 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TFB1MQ8WVM0 346 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 FATE1Q969F0 183 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 AZIN2Q96A70 460 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 HDAC11Q96DB2 347 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TTC25Q96NG3 672 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 PPP1R2P1Q96PQ5 205 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms