RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 LRMPQ12912 555 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 CAMK2GQ13555 558 aaPredicted RBP19.2■□□□□ 0.66
CLN3-241ENST00000635861 CCDC40Q4G0X9 1142 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 TMEM215Q68D42 235 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 KIAA0907Q7Z7F0 614 aaPredicted RBP19.2■□□□□ 0.66
CLN3-241ENST00000635861 OR2T3Q8NH03 318 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 NDRG1Q92597 394 aaKnown RBP19.2■□□□□ 0.66
CLN3-241ENST00000635861 EDEM1Q92611 657 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 SFMBT1Q9UHJ3 866 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLN3-241ENST00000635861 PLA2G4CQ9UP65 541 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 KCNJ18B7U540 433 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 IGLV3-27P01718 113 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 PRKCHP24723 683 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 HLA-FP30511 346 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 DEKP35659 375 aaKnown RBP19.19■□□□□ 0.66
CLN3-241ENST00000635861 GCNT1Q02742 428 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 PPM1KQ8N3J5 372 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 ERLEC1Q96DZ1 483 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 SCNM1Q9BWG6 230 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 GPR174Q9BXC1 333 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 TMEM121BQ9BXQ6 578 aaPredicted RBP19.19■□□□□ 0.66
CLN3-241ENST00000635861 FSCN3Q9NQT6 498 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 PCDHB4Q9Y5E5 795 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 CABIN1Q9Y6J0 2220 aa19.19■□□□□ 0.66
CLN3-241ENST00000635861 KNL1Q8NG31 2342 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 METTL12A8MUP2 240 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 SART1O43290 800 aaKnown RBP19.18■□□□□ 0.66
CLN3-241ENST00000635861 GNA14O95837 355 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 LCP1P13796 627 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 CD59P13987 128 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 SLC11A2P49281 568 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 SIM1P81133 766 aaPredicted RBP19.18■□□□□ 0.66
CLN3-241ENST00000635861 ZBTB16Q05516 673 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 ZNF423Q2M1K9 1284 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 DDX50Q9BQ39 737 aaKnown RBP19.18■□□□□ 0.66
CLN3-241ENST00000635861 TMEM245Q9H330 911 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 WDFY3Q8IZQ1 3526 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 TMEM131Q92545 1883 aa19.18■□□□□ 0.66
CLN3-241ENST00000635861 C1QTNF9BB2RNN3 333 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 M0QYV0 167 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 LTFP02788 710 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 ATP5BP06576 529 aaKnown RBP19.17■□□□□ 0.66
CLN3-241ENST00000635861 C1QTNF9P0C862 333 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 ZNF883P0CG24 379 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 PABPC1P11940 636 aaKnown RBP19.17■□□□□ 0.66
CLN3-241ENST00000635861 MARSP56192 900 aaKnown RBP19.17■□□□□ 0.66
CLN3-241ENST00000635861 GRIK2Q13002 908 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 NNTQ13423 1086 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 MEA1Q16626 185 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 DCAF12L1Q5VU92 463 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 TTI2Q6NXR4 508 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 PMF1Q6P1K2 205 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 IL27RAQ6UWB1 636 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 CHST9Q7L1S5 443 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 LMO3Q8TAP4 145 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 TFAP2BQ92481 460 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 GATA6Q92908 595 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 TRIM62Q9BVG3 475 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 GGA2Q9UJY4 613 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 MSRB2Q9Y3D2 182 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 ZFHX4Q86UP3 3567 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 DMXL2Q8TDJ6 3036 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 TYW5A2RUC4 315 aaKnown RBP19.17■□□□□ 0.66
CLN3-241ENST00000635861 FAM221BA6H8Z2 402 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 TSPAN3O60637 253 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 FNDC3BQ53EP0 1204 aaKnown RBP19.17■□□□□ 0.66
CLN3-241ENST00000635861 PIK3R6Q5UE93 754 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 BEND5Q7L4P6 421 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 ADIPOR2Q86V24 386 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 SORCS1Q8WY21 1168 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 ERCC4Q92889 916 aaPredicted RBP19.17■□□□□ 0.66
CLN3-241ENST00000635861 SERPINB11Q96P15 392 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 LHX5Q9H2C1 402 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 ABCB8Q9NUT2 735 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 SUN2Q9UH99 717 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 MAN1B1Q9UKM7 699 aa19.17■□□□□ 0.66
CLN3-241ENST00000635861 SPAARA0A1B0GVQ0 90 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 BCAT2O15382 392 aaPredicted RBP19.16■□□□□ 0.66
CLN3-241ENST00000635861 MSI1O43347 362 aaKnown RBP19.16■□□□□ 0.66
CLN3-241ENST00000635861 ACSL4O60488 711 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 CER1O95813 267 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 DLDP09622 509 aaKnown RBP19.16■□□□□ 0.66
CLN3-241ENST00000635861 MAOBP27338 520 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 RPL34P49207 117 aaKnown RBP19.16■□□□□ 0.66
CLN3-241ENST00000635861 RGS7P49802 495 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 TBX4P57082 545 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 EHBP1Q8NDI1 1231 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 OSGEPQ9NPF4 335 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 SCML1Q9UN30 329 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 CNTN6Q9UQ52 1028 aa19.16■□□□□ 0.66
CLN3-241ENST00000635861 PTPRBP23467 1997 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 ANKRD11Q6UB99 2663 aaPredicted RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 RNF225M0QZC1 329 aaPredicted RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 CD44P16070 742 aaKnown RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 POLR2EP19388 210 aaKnown RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 BRD2P25440 801 aaKnown RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 ACADSBP45954 432 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 PTPRNQ16849 979 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 FAM133BQ5BKY9 247 aaKnown RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms