RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 OSBPL2Q9H1P3 480 aa22.76■■□□□ 1.23
PNKP-220ENST00000627232 SSU72Q9NP77 194 aaKnown RBP22.76■■□□□ 1.23
PNKP-220ENST00000627232 EIF2B3Q9NR50 452 aaKnown RBP22.76■■□□□ 1.23
PNKP-220ENST00000627232 SAGE1Q9NXZ1 904 aa22.76■■□□□ 1.23
PNKP-220ENST00000627232 PLXNA3P51805 1871 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 FOXO6A8MYZ6 492 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 I6L893 689 aaPredicted RBP22.75■■□□□ 1.23
PNKP-220ENST00000627232 NBNO60934 754 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 KRT15P19012 456 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 STX2P32856 288 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 MSH2P43246 934 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 SLC5A3P53794 718 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 YWHAGP61981 247 aaKnown RBP eCLIP22.75■■□□□ 1.23
PNKP-220ENST00000627232 EIF4EBP2Q13542 120 aaPredicted RBP22.75■■□□□ 1.23
PNKP-220ENST00000627232 DYDC1Q8WWB3 177 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 APBB2Q92870 758 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 P2RY11Q96G91 374 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 SGSM3Q96HU1 749 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 PAFAH2Q99487 392 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 TKTL2Q9H0I9 626 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 PRDM12Q9H4Q4 367 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 SMG5Q9UPR3 1016 aaKnown RBP22.75■■□□□ 1.23
PNKP-220ENST00000627232 PCDHB7Q9Y5E2 793 aa22.75■■□□□ 1.23
PNKP-220ENST00000627232 FAM47DPA6NHR8 397 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 RNF103O00237 685 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 PITPNM1O00562 1244 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 TRDMT1O14717 391 aaKnown RBP22.74■■□□□ 1.23
PNKP-220ENST00000627232 TADA2AO75478 443 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 MLNP12872 115 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 AP1B1Q10567 949 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 MPP2Q14168 576 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 SLC39A12Q504Y0 691 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 BRMS1LQ5PSV4 323 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 BTBD8Q5XKL5 378 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 ZNF534Q76KX8 674 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 SRLQ86TD4 932 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 CCDC33Q8N5R6 958 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 SCAMP5Q8TAC9 235 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 DCAKDQ8WVC6 231 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 CKAP2Q8WWK9 683 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 SEPT8Q92599 483 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 SMC6Q96SB8 1091 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 DNAJB4Q9UDY4 337 aa22.74■■□□□ 1.23
PNKP-220ENST00000627232 TCRBV9S1A1TA0A576 114 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 AVILO75366 819 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 HTR7P34969 479 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 SERPINB6P35237 376 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 GPNMBQ14956 572 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 QPCTQ16769 361 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 ABI1Q8IZP0 508 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 AGGF1Q8N302 714 aaeCLIP22.73■■□□□ 1.23
PNKP-220ENST00000627232 ANKRD42Q8N9B4 389 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 COLGALT1Q8NBJ5 622 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 DBF4BQ8NFT6 615 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 C8orf48Q96LL4 319 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 NSRP1Q9H0G5 558 aaKnown RBP22.73■■□□□ 1.23
PNKP-220ENST00000627232 SMOC2Q9H3U7 446 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 ARHGEF38Q9NXL2 777 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 OR12D3Q9UGF7 316 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 PRG3Q9Y2Y8 225 aaPredicted RBP22.73■■□□□ 1.23
PNKP-220ENST00000627232 RRP15Q9Y3B9 282 aaKnown RBP22.73■■□□□ 1.23
PNKP-220ENST00000627232 VWA8A3KMH1 1905 aa22.73■■□□□ 1.23
PNKP-220ENST00000627232 TRIM66O15016 1216 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 IRAK2O43187 625 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 AMHP03971 560 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 MX2P20592 715 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 MAGEA11P43364 429 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 EFTUD2Q15029 972 aaKnown RBP eCLIP22.72■■□□□ 1.237e-7■■■■■ 37.5
PNKP-220ENST00000627232 PARP6Q2NL67 630 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 SYCP2LQ5T4T6 812 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 GKAP1Q5VSY0 366 aaPredicted RBP22.72■■□□□ 1.23
PNKP-220ENST00000627232 DENND5BQ6ZUT9 1274 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 SIGLEC10Q96LC7 697 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 IGSF9Q9P2J2 1179 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 ZC3H7BQ9UGR2 993 aaKnown RBP22.72■■□□□ 1.23
PNKP-220ENST00000627232 MTSS1O43312 755 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 HOXA2O43364 376 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 CPP00450 1065 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 OR4Q2P0C623 313 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 IFNAR2P48551 515 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 PPIDQ08752 370 aaKnown RBP22.72■■□□□ 1.23
PNKP-220ENST00000627232 WASHC5Q12768 1159 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 MTM1Q13496 603 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 MRPL58Q14197 206 aaKnown RBP22.72■■□□□ 1.23
PNKP-220ENST00000627232 VARS2Q5ST30 1063 aaKnown RBP22.72■■□□□ 1.23
PNKP-220ENST00000627232 LRRC34Q8IZ02 419 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 CACNA2D3Q8IZS8 1091 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 CCNYQ8ND76 341 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 MGARPQ8TDB4 240 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 SLC44A1Q8WWI5 657 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 RNF34Q969K3 372 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 SEC16BQ96JE7 1060 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 CASD1Q96PB1 797 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 HAPLN3Q96S86 360 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 ADAM28Q9UKQ2 775 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 TTLL3Q9Y4R7 772 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 PCDHB5Q9Y5E4 795 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 FAM169AQ9Y6X4 670 aa22.72■■□□□ 1.23
PNKP-220ENST00000627232 TANC1Q9C0D5 1861 aa22.71■■□□□ 1.23
PNKP-220ENST00000627232 IQANK1A0A1B0GTG1 560 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms