RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CAMK2GQ13555 558 aaPredicted RBP12.42□□□□□ -0.42
UPF3B-204ENST00000619445 ZNF423Q2M1K9 1284 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 UNQ6494/PRO21346Q6UXR6 183 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 BEND5Q7L4P6 421 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 OR2T3Q8NH03 318 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 ADAM33Q9BZ11 813 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 MKRN2Q9H000 416 aaKnown RBP12.42□□□□□ -0.42
UPF3B-204ENST00000619445 SUN2Q9UH99 717 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 NEUROG3Q9Y4Z2 214 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 CABIN1Q9Y6J0 2220 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 TRIM49BA6NDI0 452 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 M0QYV0 167 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 TULP2O00295 520 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 MED7O43513 233 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 CER1O95813 267 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 IGLV3-27P01718 113 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 DLDP09622 509 aaKnown RBP12.41□□□□□ -0.42
UPF3B-204ENST00000619445 ZNF883P0CG24 379 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 LCP1P13796 627 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 SIM1P81133 766 aaPredicted RBP12.41□□□□□ -0.42
UPF3B-204ENST00000619445 FNDC3BQ53EP0 1204 aaKnown RBP12.41□□□□□ -0.42
UPF3B-204ENST00000619445 ENOSF1Q7L5Y1 443 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 DEFB119Q8N690 84 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 RBBP8NLQ8NC74 664 aaPredicted RBP12.41□□□□□ -0.42
UPF3B-204ENST00000619445 UBA3Q8TBC4 463 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 EDEM1Q92611 657 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 SERPINB11Q96P15 392 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 GPR174Q9BXC1 333 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 SFMBT1Q9UHJ3 866 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 GGA2Q9UJY4 613 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 SCML1Q9UN30 329 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 WASF3Q9UPY6 502 aa12.41□□□□□ -0.42
UPF3B-204ENST00000619445 METTL12A8MUP2 240 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 KRT37O76014 449 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 ASLP04424 464 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 PABPC1P11940 636 aaKnown RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 POLR2EP19388 210 aaKnown RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 HLA-FP30511 346 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 COPAP53621 1224 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 MARSP56192 900 aaKnown RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 TBX4P57082 545 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 MTA1Q13330 715 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 TTC31Q49AM3 519 aaPredicted RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 TTI2Q6NXR4 508 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 PMF1Q6P1K2 205 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 CHST9Q7L1S5 443 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 KIAA0907Q7Z7F0 614 aaPredicted RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 KDF1Q8NAX2 398 aaPredicted RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 KDM1BQ8NB78 822 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 HJURPQ8NCD3 748 aaPredicted RBP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 EHBP1Q8NDI1 1231 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 STK32AQ8WU08 396 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 NELFBQ8WX92 580 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 SCNM1Q9BWG6 230 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 LHX5Q9H2C1 402 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 TMEM245Q9H330 911 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 ABCB8Q9NUT2 735 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 MAN1B1Q9UKM7 699 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 TLR6Q9Y2C9 796 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 PCDHB9Q9Y5E1 797 aa12.4□□□□□ -0.42
UPF3B-204ENST00000619445 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.4□□□□□ -0.42
UPF3B-204ENST00000619445 ANKRD11Q6UB99 2663 aaPredicted RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 BCAT2O15382 392 aaPredicted RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 ACSL4O60488 711 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 TSPAN3O60637 253 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 RNASEH1O60930 286 aaKnown RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 AFPP02771 609 aaKnown RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 PRKCSHP14314 528 aaPredicted RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 PRKCHP24723 683 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 ST8SIA6P61647 398 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 KCNH2Q12809 1159 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 PAK1Q13153 545 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 TEAD4Q15561 434 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 PIK3R6Q5UE93 754 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 DCAF12L1Q5VU92 463 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 TMEM215Q68D42 235 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 KLHL10Q6JEL2 608 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 TRIM59Q8IWR1 403 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 TFAP2BQ92481 460 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 NDRG1Q92597 394 aaKnown RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 P2RY11Q96G91 374 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 SLC6A17Q9H1V8 727 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 OSGEPQ9NPF4 335 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 TPX2Q9ULW0 747 aaKnown RBP12.39□□□□□ -0.43
UPF3B-204ENST00000619445 CLEC4EQ9ULY5 219 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 CNTN6Q9UQ52 1028 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 MSRB2Q9Y3D2 182 aa12.39□□□□□ -0.43
UPF3B-204ENST00000619445 MSI1O43347 362 aaKnown RBP12.38□□□□□ -0.43
UPF3B-204ENST00000619445 GJB3O75712 270 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MOCS3O95396 460 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 APOEP02649 317 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 DNTTP04053 509 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 CD59P13987 128 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MATKP42679 507 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 RPL34P49207 117 aaKnown RBP12.38□□□□□ -0.43
UPF3B-204ENST00000619445 RGS7P49802 495 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 AFF3P51826 1226 aaKnown RBP12.38□□□□□ -0.43
UPF3B-204ENST00000619445 SNX16P57768 344 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 GRIK2Q13002 908 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MORC3Q14149 939 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms