RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CLPBQ9H078 707 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 NEK6Q9HC98 313 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 STMN3Q9NZ72 180 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 PIM2Q9P1W9 311 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 PTPN22Q9Y2R2 807 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 NOSIPQ9Y314 301 aaKnown RBP10.52□□□□□ -0.73
VPS39-214ENST00000614932 ARHGEF35A5YM69 484 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 MSI1O43347 362 aaKnown RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 PEX10O60683 326 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 PSMD10O75832 226 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 BMP10O95393 424 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 H6PDO95479 791 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 DLDP09622 509 aaKnown RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 CFL1P23528 166 aaKnown RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 PTGS2P35354 604 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 COILP38432 576 aaPredicted RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 NR4A2P43354 598 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 PRKCEQ02156 737 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 GBE1Q04446 702 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 BNIP3Q12983 259 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 NBPF12Q5TAG4 269 aaPredicted RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 SLX4IPQ5VYV7 408 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 RHBDF2Q6PJF5 856 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 IDO2Q6ZQW0 420 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 GLRX5Q86SX6 157 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 SETD3Q86TU7 594 aaPredicted RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 C4orf33Q8N1A6 199 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 PQLC1Q8N2U9 271 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 RASSF5Q8WWW0 418 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 ZNF512Q96ME7 567 aaPredicted RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 LXNQ9BS40 222 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 IL20Q9NYY1 176 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 PCSK1NQ9UHG2 260 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 AJAP1Q9UKB5 411 aaPredicted RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 SOX13Q9UN79 622 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 MRPL11Q9Y3B7 192 aaKnown RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 SYNGAP1Q96PV0 1343 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 TNS1Q9HBL0 1735 aaKnown RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 TMX2-CTNND1H3BSU7 103 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 TYROBPO43914 113 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 NUAK1O60285 661 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 ZNF254O75437 659 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 MYL2P10916 166 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 PSMC3P17980 439 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 KRT15P19012 456 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 ITIH2P19823 946 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 STX1BP61266 288 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 ZNF618Q5T7W0 954 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 ANKRD26P1Q6NSI1 321 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 DGLUCYQ7Z3D6 616 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 CCDC28AQ8IWP9 274 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 SHKBP1Q8TBC3 707 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 KBTBD7Q8WVZ9 684 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 HSD17B14Q9BPX1 270 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 SMARCAD1Q9H4L7 1026 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 PCIF1Q9H4Z3 704 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 RPF2Q9H7B2 306 aaKnown RBP10.51□□□□□ -0.73
VPS39-214ENST00000614932 SMYD3Q9H7B4 428 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 MANSC1Q9H8J5 431 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 GDAP2Q9NXN4 497 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 MOCS1Q9NZB8 636 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 BCAP29Q9UHQ4 241 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 VANGL2Q9ULK5 521 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 RWDD3Q9Y3V2 267 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 ASTN1O14525 1302 aa10.51□□□□□ -0.73
VPS39-214ENST00000614932 TBX3O15119 743 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PEX14O75381 377 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 GPC4O75487 556 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 GGPS1O95749 300 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 NR3C1P04150 777 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 ASNSP08243 561 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 CD247P20963 164 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 CTBSQ01459 385 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 SPP2Q13103 211 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 TBCCQ15814 346 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PPP6R3Q5H9R7 873 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 MDH1BQ5I0G3 518 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 ATAD3BQ5T9A4 648 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 MOXD1Q6UVY6 613 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 IRF2BP2Q7Z5L9 587 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PRUNE1Q86TP1 453 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 ALYREFQ86V81 257 aaKnown RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 CAND1Q86VP6 1230 aaKnown RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 MICALL2Q8IY33 904 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 SAMD14Q8IZD0 417 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 ZNF420Q8TAQ5 688 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 ELMO3Q96BJ8 720 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 TRIT1Q9H3H1 467 aaKnown RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 ANLNQ9NQW6 1124 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 C8orf4Q9NR00 106 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 CDC14AQ9UNH5 594 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PSMD13Q9UNM6 376 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 AP4S1Q9Y587 144 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PSME4Q14997 1843 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 C10orf71Q711Q0 1435 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 A0A1W2PPW3 197 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 DCAF8L1A6NGE4 600 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 POLR1CO15160 346 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 TP73O15350 636 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 TRIM49P0CI25 452 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms