RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 VAMP7P51809 220 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 APBA1Q02410 837 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 KIF5AQ12840 1032 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 SLC18A3Q16572 532 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 HLA-BQ31612 363 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 CBWD6Q4V339 395 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 CCDC157Q569K6 752 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 TDRD12Q587J7 1177 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 CBWD3Q5JTY5 395 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 CBWD5Q5RIA9 395 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 C1orf220Q5T0J3 134 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 C10orf76Q5T2E6 689 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 SLC39A4Q6P5W5 647 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 PCSK4Q6UW60 755 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 IL27RAQ6UWB1 636 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 IRF2BP2Q7Z5L9 587 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 MTERF4Q7Z6M4 381 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 SCN4BQ8IWT1 228 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 ZCCHC9Q8N567 271 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 NAT16Q8N8M0 369 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 TMC2Q8TDI7 906 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 IPO4Q8TEX9 1081 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 DNASE2BQ8WZ79 361 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 ACBD6Q9BR61 282 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 LACRTQ9GZZ8 138 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 RNF38Q9H0F5 515 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 INTS2Q9H0H0 1204 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 MIR1-1HGQ9H1L0 117 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 DEF6Q9H4E7 631 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 LUC7LQ9NQ29 371 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 SMPD4Q9NXE4 827 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 DPP3Q9NY33 737 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 CDC23Q9UJX2 597 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 CPSF3Q9UKF6 684 aaKnown RBP13.47□□□□□ -0.25
SCAF1-202ENST00000595242 GTF3C4Q9UKN8 822 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 HCN2Q9UL51 889 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 PCDHGB2Q9Y5G2 931 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 STYXL1Q9Y6J8 313 aa13.47□□□□□ -0.25
SCAF1-202ENST00000595242 NUMA1Q14980 2115 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 BTNL10A8MVZ5 291 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 MEI4A8MW99 385 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 EFCAB8A8MWE9 144 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 ANKRD63C9JTQ0 380 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 HNRNPDLO14979 420 aaKnown RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 TNFSF14O43557 240 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 TLX3O43711 291 aaPredicted RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 TRIM49P0CI25 452 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 TRIM49CP0CI26 452 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 FERP16591 822 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 SLC7A9P82251 487 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 SEMG2Q02383 582 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 KCNC4Q03721 635 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 KLHL30Q0D2K2 578 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 SV2CQ496J9 727 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 INTS6LQ5JSJ4 861 aaKnown RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 LY6G5CQ5SRR4 150 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 PAPD7Q5XG87 772 aaKnown RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 NUDT18Q6ZVK8 323 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 MIB1Q86YT6 1006 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 SPATA2LQ8IUW3 424 aaPredicted RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 PLEKHO2Q8TD55 490 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 TSC1Q92574 1164 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 NXPE2Q96DL1 559 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 SPAG5Q96R06 1193 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 PKMYT1Q99640 499 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 MSTO1Q9BUK6 570 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 STK33Q9BYT3 514 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 SLC6A17Q9H1V8 727 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 CD248Q9HCU0 757 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 DDX43Q9NXZ2 648 aaKnown RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 CFAP97Q9P2B7 532 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 APEX2Q9UBZ4 518 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 TRIM10Q9UDY6 481 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 AJAP1Q9UKB5 411 aaPredicted RBP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 GUCA1BQ9UMX6 200 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.46□□□□□ -0.25
SCAF1-202ENST00000595242 BTBD3Q9Y2F9 522 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 CPQQ9Y646 472 aa13.46□□□□□ -0.25
SCAF1-202ENST00000595242 A0A0B4J269 797 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 PYCARD-AS1I3L0S3 204 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 TULP3O75386 442 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 CD6P30203 668 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 GTF2H1P32780 548 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 STAT1P42224 750 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 MAGEA1P43355 309 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 BNC1Q01954 994 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 CYP27A1Q02318 531 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 GAD2Q05329 585 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 PPP3CAQ08209 521 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 SUZ12Q15022 739 aaKnown RBP13.45□□□□□ -0.26
SCAF1-202ENST00000595242 PTPRNQ16849 979 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 CCDC142Q17RM4 750 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 WHAMMP3Q1A5X7 153 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 CFAP221Q4G0U5 840 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 PREPLQ4J6C6 727 aaPredicted RBP13.45□□□□□ -0.26
SCAF1-202ENST00000595242 SDE2Q6IQ49 451 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 DHRS13Q6UX07 377 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 ETFBKMTQ8IXQ9 262 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 CHPFQ8IZ52 775 aa13.45□□□□□ -0.26
SCAF1-202ENST00000595242 PDCL2Q8N4E4 241 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms