RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 C2orf27AQ580R0 203 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 BRMS1LQ5PSV4 323 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 C10orf76Q5T2E6 689 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 OTUD1Q5VV17 481 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 RNF43Q68DV7 783 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 NADSYN1Q6IA69 706 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 PKN3Q6P5Z2 889 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 RFWD3Q6PCD5 774 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 ZC3H14Q6PJT7 736 aaKnown RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 SARM1Q6SZW1 724 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 SND1Q7KZF4 910 aaKnown RBP eCLIP12.34□□□□□ -0.43
LIG3-213ENST00000590630 SYT13Q7L8C5 426 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 ZNF571Q7Z3V5 609 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 VPS36Q86VN1 386 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 SFTPA1Q8IWL2 248 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 ZNF557Q8N988 423 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 HJURPQ8NCD3 748 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 CPLX3Q8WVH0 158 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 ATOH1Q92858 354 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 PIGVQ9NUD9 493 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 COX16Q9P0S2 106 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 STARD13Q9Y3M8 1113 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 DOCK4Q8N1I0 1966 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TRIM24O15164 1050 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TSPAN3O60637 253 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 SERPING1P05155 500 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TPM1P09493 284 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TDGF1P13385 188 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TFE3P19532 575 aaPredicted RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 HOXA6P31267 233 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 SDC4P31431 198 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 CASP14P31944 242 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 KIR2DL1P43626 348 aaPredicted RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 CXCR3P49682 368 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 DEUP1Q05D60 604 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TDRD12Q587J7 1177 aaKnown RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 MS4A13Q5J8X5 152 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 ACBD5Q5T8D3 534 aaPredicted RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 HGSNATQ68CP4 663 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TRNP1Q6NT89 227 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 DNAJC24Q6P3W2 148 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 BNIPLQ7Z465 357 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 TRMT11Q7Z4G4 463 aaKnown RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 CHSY1Q86X52 802 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 VSTM4Q8IW00 320 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 MCOLN2Q8IZK6 566 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 NELL1Q92832 810 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 CFAP57Q96MR6 1250 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 PRICKLE1Q96MT3 831 aaPredicted RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 TBCBQ99426 244 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 SELENOOQ9BVL4 669 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 ADAM33Q9BZ11 813 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 WDCPQ9H6R7 721 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 CALCOCO1Q9P1Z2 691 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 XPO7Q9UIA9 1087 aaKnown RBP12.33□□□□□ -0.44
LIG3-213ENST00000590630 SLC8A2Q9UPR5 921 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 PCDHGA2Q9Y5H1 932 aa12.33□□□□□ -0.44
LIG3-213ENST00000590630 SPAG17Q6Q759 2223 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 GOLGA6L7A0A1B0GV03 622 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 TCRBV5S1A1TA0A578 114 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 ANKRD62A6NC57 917 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 C2CD4BA6NLJ0 364 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 SIGLEC16A6NMB1 481 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 F5H5T6 163 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 K7ESF4 209 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 DDX3XO00571 662 aaKnown RBP eCLIP12.32□□□□□ -0.44
LIG3-213ENST00000590630 TBL1XO60907 577 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 CHRM1P11229 460 aaPredicted RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 SKILP12757 684 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 PDGFRAP16234 1089 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 TACR2P21452 398 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 HNRNPH3P31942 346 aaKnown RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 RDXP35241 583 aaKnown RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 TIE1P35590 1138 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 NBL1P41271 181 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 PTPN9P43378 593 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 SGSHP51688 502 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 EIF4HQ15056 248 aaKnown RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 E2F5Q15329 346 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 TTC39BQ5VTQ0 682 aaPredicted RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 RAP1GAP2Q684P5 730 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 TSSK4Q6SA08 328 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 ANKS1BQ7Z6G8 1248 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 PHLDB2Q86SQ0 1253 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 DRC7Q8IY82 874 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 CAMKK1Q8N5S9 505 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 EMC1Q8N766 993 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 ZNF513Q8N8E2 541 aaPredicted RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 IL17RCQ8NAC3 791 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 RXFP2Q8WXD0 754 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 PRMT1Q99873 361 aaKnown RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 TRIM5Q9C035 493 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 C2orf42Q9NWW7 574 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 ZSCAN32Q9NX65 697 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 ARHGEF38Q9NXL2 777 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 TAS2R14Q9NYV8 317 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 MMP17Q9ULZ9 603 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 ZFHX2Q9C0A1 2572 aaPredicted RBP12.32□□□□□ -0.44
LIG3-213ENST00000590630 EML5Q05BV3 1969 aa12.32□□□□□ -0.44
LIG3-213ENST00000590630 CCDC163A0A0D9SF12 145 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms