RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TARBP2	Q15633	366 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NFE2	Q16621	373 aa	Predicted RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM110C	Q1W6H9	321 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IGSF11	Q5DX21	431 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DNAJC24	Q6P3W2	148 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	RAPH1	Q70E73	1250 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LRRTM3	Q86VH5	581 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	UNC45B	Q8IWX7	931 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KATNAL2	Q8IYT4	538 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	OR6J1	Q8NGC5	347 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM167A	Q96KS9	214 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	COG8	Q96MW5	612 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM111A	Q96PZ2	611 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PAFAH2	Q99487	392 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	WDR83	Q9BRX9	315 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KANSL3	Q9P2N6	904 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DPPA5	A6NC42	116 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZBTB42	B2RXF5	422 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	STMND1	H3BQB6	276 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ADCY3	O60266	1144 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZC3H11A	O75152	810 aa	Known RBP eCLIP	11.96	□□□□□ -0.5	6e-7	■■■□□ 17.4
CDK5RAP3-231	ENST00000584063	GRAP2	O75791	330 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	KRT36	O76013	467 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RNF8	O76064	485 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TOP3B	O95985	862 aa	Known RBP	11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	WEE1	P30291	646 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HOXD12	P35452	270 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HNF1B	P35680	557 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MMRN1	Q13201	1228 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HIF1A	Q16665	826 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SGSM1	Q2NKQ1	1148 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PTPN20	Q4JDL3	420 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CORO6	Q6QEF8	472 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PHF13	Q86YI8	300 aa	Predicted RBP	11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MFN1	Q8IWA4	741 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PALM2	Q8IXS6	379 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CALN1	Q9BXU9	219 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SDCBP2	Q9H190	292 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RNPEPL1	Q9HAU8	725 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PIDD1	Q9HB75	910 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SETD4	Q9NVD3	440 aa		11.96	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ADCY6	O43306	1168 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PSTPIP1	O43586	416 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ASS1	P00966	412 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PRKCB	P05771	671 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TPBGL	P0DKB5	382 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CXCL8	P10145	99 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	BGN	P21810	368 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ALDH3A1	P30838	453 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RTP1	P59025	263 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CAV1	Q03135	178 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CCDC6	Q16204	474 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PDK4	Q16654	411 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CWF19L1	Q69YN2	538 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RGMB	Q6NW40	437 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FAM180B	Q6P0A1	224 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RSPH3	Q86UC2	560 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZBTB8OS	Q8IWT0	167 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CTAGE3P	Q8IX95	158 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ALLC	Q8N6M5	410 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NETO2	Q8NC67	525 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	EXD1	Q8NHP7	514 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FBXO27	Q8NI29	283 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SHKBP1	Q8TBC3	707 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CCHCR1	Q8TD31	782 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MAIP1	Q8WWC4	291 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PIWIL1	Q96J94	861 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SRPK1	Q96SB4	655 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CXCL16	Q9H2A7	254 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PARVA	Q9NVD7	372 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NR2E3	Q9Y5X4	410 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063		A0A087WZ62	844 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TMEM63A	O94886	807 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	DDX5	P17844	614 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CALB2	P22676	271 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	DNAJB1	P25685	340 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ATP6V1E1	P36543	226 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	BEX3	Q00994	111 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TNFAIP2	Q03169	654 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	KPNB1	Q14974	876 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CDO1	Q16878	200 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	IER5	Q5VY09	327 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC30A9	Q6PML9	568 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ISLR2	Q6UXK2	745 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CENPU	Q71F23	418 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZNF677	Q86XU0	584 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SYTL1	Q8IYJ3	562 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UBR7	Q8N806	425 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CLPTM1L	Q96KA5	538 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	DDX50	Q9BQ39	737 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FDXACB1	Q9BRP7	624 aa	Predicted RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC13A1	Q9BZW2	595 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZCWPW1	Q9H0M4	648 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MRPL47	Q9HD33	250 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	VTI1B	Q9UEU0	232 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZNF711	Q9Y462	761 aa		11.95	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FAM237B	A0A1B0GVD1	139 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TCRBV5S1A1T	A0A578	114 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms