RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 J3KTA2 159 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 COQ9O75208 318 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 NTSR2O95665 410 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 F9P00740 461 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A15PP0C7V4 464 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A14PP0C7W9 464 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 HADHAP40939 763 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 PAFAH1B1P43034 410 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 PTDSS1P48651 473 aaKnown RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 HARS2P49590 506 aaKnown RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 STAT5BP51692 787 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 ZNF135P52742 658 aaPredicted RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 RPP30P78346 268 aaKnown RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 WASHC5Q12768 1159 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 MPP3Q13368 585 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 MAMLD1Q13495 774 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 TBCCQ15814 346 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 WDR72Q3MJ13 1102 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 GALNTL6Q49A17 601 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 AFMIDQ63HM1 303 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 MCTP2Q6DN12 878 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 PAQR3Q6TCH7 311 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 SYNE3Q6ZMZ3 975 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 ETV3LQ6ZN32 361 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 KCTD20Q7Z5Y7 419 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 IQCA1Q86XH1 822 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 TTC39CQ8N584 583 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 STPG3Q8N7X2 389 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 AGBL3Q8NEM8 1001 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 KCNN1Q92952 543 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 GRAMD1AQ96CP6 724 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 APOPT1Q96IL0 206 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 SPATA17Q96L03 361 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 ALPK1Q96QP1 1244 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 DESI2Q9BSY9 194 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 CPEB1Q9BZB8 566 aaKnown RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 TINAGL1Q9GZM7 467 aaPredicted RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 ZWILCHQ9H900 591 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 CCDC177Q9NQR7 707 aaPredicted RBP6.26□□□□□ -1.41
VPS53-219ENST00000576019 DLL4Q9NR61 685 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 ING3Q9NXR8 418 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 XPR1Q9UBH6 696 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 CDC42EP3Q9UKI2 254 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 AGAP1Q9UPQ3 857 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 TMEM5Q9Y2B1 443 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 PCDHGB5Q9Y5G0 923 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 PSAT1Q9Y617 370 aa6.26□□□□□ -1.41
VPS53-219ENST00000576019 PSME4Q14997 1843 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 TCRBV7S2A1N4TA0A589 114 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 GRXCR1A8MXD5 290 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 NUDT19A8MXV4 375 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 CYP26A1O43174 497 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 ECE2O60344 883 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 TSPAN3O60637 253 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 ERAL1O75616 437 aaKnown RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 BEST1O76090 585 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 PGM3O95394 542 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 HMGCRP04035 888 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 PROCP04070 461 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 CLEC3BP05452 202 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 CSH1P0DML2 217 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 CSH2P0DML3 217 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 PIM1P11309 404 aaPredicted RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 IL9P15248 144 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SDHBP21912 280 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 COL8A1P27658 744 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SERPINA4P29622 427 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SLC6A4P31645 630 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 ARL4AP40617 200 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 DPP6P42658 865 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 AFF3P51826 1226 aaKnown RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 VCPP55072 806 aaKnown RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 MLLT6P55198 1093 aaPredicted RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 NKX3-2P78367 333 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 MXRA7P84157 204 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 PRR5P85299 388 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 NFIAQ12857 509 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SCARB2Q14108 478 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 TMEM266Q2M3C6 531 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 TIGD5Q53EQ6 642 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 HERC4Q5GLZ8 1057 aaPredicted RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 RNF43Q68DV7 783 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 MFSD6Q6ZSS7 791 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 APOBEC3FQ8IUX4 373 aaKnown RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 RPAP2Q8IXW5 612 aaPredicted RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 FAM46DQ8NEK8 389 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 IL17RDQ8NFM7 739 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SHKBP1Q8TBC3 707 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 CPT1BQ92523 772 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SNX21Q969T3 373 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 FAM120BQ96EK7 910 aaKnown RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 COG3Q96JB2 828 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 MOCS1Q9NZB8 636 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 GPR160Q9UJ42 338 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 SMG5Q9UPR3 1016 aaKnown RBP6.25□□□□□ -1.41
VPS53-219ENST00000576019 ATP11BQ9Y2G3 1177 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 UBR2Q8IWV8 1755 aa6.25□□□□□ -1.41
VPS53-219ENST00000576019 TMEM221A6NGB7 291 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 AGAP14A8MT82 685 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms