RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DDX50Q9BQ39 737 aaKnown RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 VPS16Q9H269 839 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 POPDC2Q9HBU9 364 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 SIX2Q9NPC8 291 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 C2orf42Q9NWW7 574 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 PLK2Q9NYY3 685 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 BCCIPQ9P287 314 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS53-214ENST00000572607 PCDHGC3Q9UN70 934 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 MYO16Q9Y6X6 1858 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 ZZEF1O43149 2961 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 SPEGQ15772 3267 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 LAMA1P25391 3075 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 E5RJQ4 531 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 FOXN3O00409 490 aaPredicted RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 MSI1O43347 362 aaKnown RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 RHOBTB1O94844 696 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 PENKP01210 267 aaPredicted RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 APOEP02649 317 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 KLKB1P03952 638 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 RETP07949 1114 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 HOXB2P14652 356 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 PTMSP20962 102 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 GBP1P32455 592 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 RPL34P49207 117 aaKnown RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 YWHAZP63104 245 aaKnown RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 INSM1Q01101 510 aaPredicted RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 ARID5AQ03989 594 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 TYRO3Q06418 890 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 NNTQ13423 1086 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 DRAP1Q14919 205 aaPredicted RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 KRT31Q15323 416 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 ELF2Q15723 593 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 CRY1Q16526 586 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 USP39Q53GS9 565 aaKnown RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 EFHC1Q5JVL4 640 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 KLHDC7AQ5VTJ3 777 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 CDKAL1Q5VV42 579 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 C11orf57Q6ZUT1 292 aaPredicted RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 TOGARAM2Q6ZUX3 1019 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 BEND5Q7L4P6 421 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 ANKS1BQ7Z6G8 1248 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 TMEM110Q86TL2 294 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 SLC47A2Q86VL8 602 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 RETREG3Q86VR2 466 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 CHPFQ8IZ52 775 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 PHTF2Q8N3S3 785 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 ZNF557Q8N988 423 aaPredicted RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 TMEM35BQ8NCS4 154 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 C1orf131Q8NDD1 294 aaKnown RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 DQX1Q8TE96 717 aaKnown RBP8.43□□□□□ -1.06
VPS53-214ENST00000572607 PPP1R13BQ96KQ4 1090 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 SPACA7Q96KW9 195 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 SPAG5Q96R06 1193 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 STK33Q9BYT3 514 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 SLC2A11Q9BYW1 496 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 LHX5Q9H2C1 402 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 FAM204AQ9H8W3 233 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 ACP6Q9NPH0 428 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 PLCB1Q9NQ66 1216 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 FANCLQ9NW38 375 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 EBF1Q9UH73 591 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 SLC12A6Q9UHW9 1150 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 USP18Q9UMW8 372 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 STARD13Q9Y3M8 1113 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 DAAM1Q9Y4D1 1078 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 FHOD1Q9Y613 1164 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 BAHCC1Q9P281 2608 aa8.43□□□□□ -1.06
VPS53-214ENST00000572607 ASPMQ8IZT6 3477 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 TCRBV21S2A2A0A5A6 115 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 SMTNL1A8MU46 457 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 SGK1O00141 431 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 NPC1O15118 1278 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 IRAK2O43187 625 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 PAPSS1O43252 624 aaPredicted RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 SIAH2O43255 324 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 ACSL4O60488 711 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 FOXD2O60548 495 aaPredicted RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 TSPAN3O60637 253 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 HSF2BPO75031 334 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 GLI1P08151 1106 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 PNMA6AP0CW24 399 aaPredicted RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 UCHL3P15374 230 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 CYP11B1P15538 503 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 NTSR1P30989 418 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 KIR2DL1P43626 348 aaPredicted RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 COPB1P53618 953 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 CDK17Q00537 523 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 RING1Q06587 406 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 KCNMA1Q12791 1236 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 SRSF5Q13243 272 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 BYSLQ13895 437 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 STARD3Q14849 445 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 EIF4HQ15056 248 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 SYCP1Q15431 976 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 ADGRF1Q5T601 910 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 FYB2Q5VWT5 728 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 OR6B2Q6IFH4 312 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 CAVIN1Q6NZI2 390 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 ZDHHC17Q8IUH5 632 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 FAM217AQ8IXS0 508 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms