RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 CPT1CQ8TCG5 803 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 LEO1Q8WVC0 666 aaPredicted RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 BHMTQ93088 406 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 APOLD1Q96LR9 279 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 BBS2Q9BXC9 721 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 RNF26Q9BY78 433 aaPredicted RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 RBCK1Q9BYM8 510 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 TGIF2Q9GZN2 237 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 LHX5Q9H2C1 402 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 CCSER2Q9H7U1 834 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 METTL5Q9NRN9 209 aaKnown RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 THAP10Q9P2Z0 257 aaPredicted RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 KCND3Q9UK17 655 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 GTF3C4Q9UKN8 822 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 PPM1HQ9ULR3 514 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 PCDHA12Q9UN75 941 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 TP53TG5Q9Y2B4 290 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 TCP11X1B4DZS4 312 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 CACNG3O60359 315 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 TOM1L1O75674 476 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 FAM13AO94988 1023 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 GP1BAP07359 652 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 UGT1A5P35504 534 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 MATR3P43243 847 aaKnown RBP eCLIP7.3□□□□□ -1.24
CHD3-213ENST00000571249 NPTX2P47972 431 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 TAF6P49848 677 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 CDH8P55286 799 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 MYL7Q01449 175 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 ENPP2Q13822 863 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 NTRK3Q16288 839 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 KIAA0895LQ68EN5 471 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 RBM44Q6ZP01 1051 aaKnown RBP7.3□□□□□ -1.24
CHD3-213ENST00000571249 TPGS1Q6ZTW0 290 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 TMPRSS9Q7Z410 1059 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 CATSPER3Q86XQ3 398 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 SPATA2LQ8IUW3 424 aaPredicted RBP7.3□□□□□ -1.24
CHD3-213ENST00000571249 HSCBQ8IWL3 235 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 TP53INP2Q8IXH6 220 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 TEX19Q8NA77 164 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 OR4C6Q8NH72 309 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 SORCS1Q8WY21 1168 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 KIFAP3Q92845 792 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 RNF34Q969K3 372 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 NAP1L4Q99733 375 aaKnown RBP7.3□□□□□ -1.24
CHD3-213ENST00000571249 PLK2Q9NYY3 685 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 ACSL6Q9UKU0 697 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 DOLKQ9UPQ8 538 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 KIAA1024Q9UPX6 916 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 ENTPD4Q9Y227 616 aa7.3□□□□□ -1.24
CHD3-213ENST00000571249 CCDC187A0A096LP49 1063 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 CPED1A4D0V7 1026 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 SFI1A8K8P3 1242 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 KIAA1324LA8MWY0 1029 aaPredicted RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 PLD2O14939 933 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 NPC1O15118 1278 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 CLDN3O15551 220 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 NDUFB5O43674 189 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 MED24O75448 989 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 EPHX1P07099 455 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 IRF1P10914 325 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 ACO1P21399 889 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 DGKAP23743 735 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 TXKP42681 527 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 PPP3CCP48454 512 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 MCL1Q07820 350 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 SSRP1Q08945 709 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 DRAP1Q14919 205 aaPredicted RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 CDKN3Q16667 212 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 CFAP221Q4G0U5 840 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 DCAF6Q58WW2 860 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 INTS6LQ5JSJ4 861 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 JADE1Q6IE81 842 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 DENND5BQ6ZUT9 1274 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 FBXO39Q8N4B4 442 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 OXR1Q8N573 874 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 ZNF366Q8N895 744 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 OR2T3Q8NH03 318 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 TPCN2Q8NHX9 752 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 KCNB2Q92953 911 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 GRAMD1AQ96CP6 724 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 SPATA17Q96L03 361 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 PKMYT1Q99640 499 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 USB1Q9BQ65 265 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 ACBD6Q9BR61 282 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 HAPLN2Q9GZV7 340 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 LSG1Q9H089 658 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 ERVMER34-1Q9H9K5 563 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 SGK2Q9HBY8 427 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 PREBQ9HCU5 417 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 CYLDQ9NQC7 956 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 KMT5AQ9NQR1 393 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 PRDM8Q9NQV8 689 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 DDX43Q9NXZ2 648 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 FOXJ2Q9P0K8 574 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 SEPT10Q9P0V9 454 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 WDR35Q9P2L0 1181 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 ARHGAP28Q9P2N2 729 aa7.29□□□□□ -1.24
CHD3-213ENST00000571249 TDRD6O60522 2096 aaKnown RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 ARHGEF17Q96PE2 2063 aaPredicted RBP7.29□□□□□ -1.24
CHD3-213ENST00000571249 CITO14578 2027 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms