RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 UCKL1Q9NWZ5 548 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 ORC3Q9UBD5 711 aaPredicted RBP11.81□□□□□ -0.52
CDH3-208ENST00000569036 SERGEFQ9UGK8 458 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 U3KQA8 63 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 HIVEP1P15822 2718 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 AKAP9Q99996 3911 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 MTORP42345 2549 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 TISP43B9A030 160 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 TLR5O60602 858 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 PDGFRBP09619 1106 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 RNF224P0DH78 156 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 WT1P19544 449 aaPredicted RBP11.8□□□□□ -0.52
CDH3-208ENST00000569036 DGKAP23743 735 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 COL8A1P27658 744 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 GRNP28799 593 aaKnown RBP11.8□□□□□ -0.52
CDH3-208ENST00000569036 PGFP49763 221 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 WNT7BP56706 349 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 TFAMQ00059 246 aaKnown RBP11.8□□□□□ -0.52
CDH3-208ENST00000569036 KCNAB2Q13303 367 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 FNDC3BQ53EP0 1204 aaKnown RBP11.8□□□□□ -0.52
CDH3-208ENST00000569036 Q6ZNB5 142 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 USP30Q70CQ3 517 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 LIMS2Q7Z4I7 341 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 ATCAYQ86WG3 371 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 NT5DC4Q86YG4 428 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 CCDC83Q8IWF9 413 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 SCAMP5Q8TAC9 235 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 GANCQ8TET4 914 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 SSC4DQ8WTU2 575 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 FAM84AQ96KN4 292 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 APOLD1Q96LR9 279 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 ZNF518BQ9C0D4 1074 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 KDM4CQ9H3R0 1056 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 PRSS16Q9NQE7 514 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 NCKAP1Q9Y2A7 1128 aa11.8□□□□□ -0.52
CDH3-208ENST00000569036 VPS37CA5D8V6 355 aaPredicted RBP11.79□□□□□ -0.52
CDH3-208ENST00000569036 ANKRD63C9JTQ0 380 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 REC8O95072 547 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 IL18RAPO95256 599 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 TBX18O95935 607 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 GIMD1P0DJR0 217 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 SLC5A2P31639 672 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 FXR2P51116 673 aaKnown RBP eCLIP11.79□□□□□ -0.52
CDH3-208ENST00000569036 CCR5P51681 352 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 OXCT1P55809 520 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 ARID5AQ03989 594 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 GOLGA8FQ08AF8 430 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 GOLGA8DPQ0D2H9 430 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 ZNF776Q68DI1 518 aaPredicted RBP11.79□□□□□ -0.52
CDH3-208ENST00000569036 ADALQ6DHV7 355 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 CRELD2Q6UXH1 353 aaPredicted RBP11.79□□□□□ -0.52
CDH3-208ENST00000569036 HS2ST1Q7LGA3 356 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 C14orf80Q86SX3 495 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 VASH2Q86V25 355 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 GAS2L3Q86XJ1 694 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 DIS3L2Q8IYB7 885 aaKnown RBP11.79□□□□□ -0.52
CDH3-208ENST00000569036 MFSD2AQ8NA29 543 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 RDH13Q8NBN7 331 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 OR2T34Q8NGX1 318 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 IFI44Q8TCB0 444 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 GOLGA1Q92805 767 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 ARRDC3Q96B67 414 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 ELOVL4Q9GZR5 314 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 PABPC3Q9H361 631 aaKnown RBP11.79□□□□□ -0.52
CDH3-208ENST00000569036 CCDC39Q9UFE4 941 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 AGO2Q9UKV8 859 aaKnown RBP11.79□□□□□ -0.52
CDH3-208ENST00000569036 CLEC4EQ9ULY5 219 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 APCP25054 2843 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 RP1P56715 2156 aa11.79□□□□□ -0.52
CDH3-208ENST00000569036 LRRC72A6NJI9 287 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 K7ENM7 598 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 DYNC1I1O14576 645 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 TIMM44O43615 452 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 WARSP23381 471 aaKnown RBP11.78□□□□□ -0.52
CDH3-208ENST00000569036 SLC5A3P53794 718 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 POLE2P56282 527 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 POU5F1Q01860 360 aaKnown RBP11.78□□□□□ -0.52
CDH3-208ENST00000569036 NAPEPLDQ6IQ20 393 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 RBM44Q6ZP01 1051 aaKnown RBP11.78□□□□□ -0.52
CDH3-208ENST00000569036 DPH6Q7L8W6 267 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 CSGALNACT2Q8N6G5 542 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 ZSCAN1Q8NBB4 408 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 CYB5D2Q8WUJ1 264 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 SYAP1Q96A49 352 aaPredicted RBP11.78□□□□□ -0.52
CDH3-208ENST00000569036 CYLDQ9NQC7 956 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 FBXL12Q9NXK8 326 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 LARSQ9P2J5 1176 aaKnown RBP11.78□□□□□ -0.52
CDH3-208ENST00000569036 SIX4Q9UIU6 781 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 ACSL6Q9UKU0 697 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 ITGA11Q9UKX5 1188 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 PCDHGA7Q9Y5G6 932 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 DOCK9Q9BZ29 2069 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 SCN8AQ9UQD0 1980 aa11.78□□□□□ -0.52
CDH3-208ENST00000569036 CCDC187A0A096LP49 1063 aa11.77□□□□□ -0.53
CDH3-208ENST00000569036 NPHP3-ACAD11A0A0J9YXS1 232 aa11.77□□□□□ -0.53
CDH3-208ENST00000569036 FAM92AA1XBS5 289 aa11.77□□□□□ -0.53
CDH3-208ENST00000569036 CLDN5O00501 218 aa11.77□□□□□ -0.53
CDH3-208ENST00000569036 MTSS1O43312 755 aa11.77□□□□□ -0.53
CDH3-208ENST00000569036 KRT19P08727 400 aa11.77□□□□□ -0.53
CDH3-208ENST00000569036 LIPCP11150 499 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms