RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 A0A1B0GTW7 788 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 METTL12A8MUP2 240 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 MSI1O43347 362 aaKnown RBP17.84■□□□□ 0.45
CLN3-216ENST00000565316 EPHX1P07099 455 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 LCP1P13796 627 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 PPP1R2P41236 205 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 NUCB2P80303 420 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 STILQ15468 1287 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 MPP7Q5T2T1 576 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 TTI2Q6NXR4 508 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 SERPINA13PQ6UXR4 307 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 ADIPOR2Q86V24 386 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 OR2T3Q8NH03 318 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 KAT5Q92993 513 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 AZIN2Q96A70 460 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 HSFY1Q96LI6 401 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 NUP58Q9BVL2 599 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 MAN1B1Q9UKM7 699 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 NEUROG3Q9Y4Z2 214 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 PCDHB4Q9Y5E5 795 aa17.84■□□□□ 0.45
CLN3-216ENST00000565316 TMEM8BA6NDV4 472 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 MEI4A8MW99 385 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 BMP6P22004 513 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 RGS7P49802 495 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 FAM193AP78312 1265 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 RING1Q06587 406 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 GRIK2Q13002 908 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 PTPRNQ16849 979 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 C1orf216Q8TAB5 229 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 PCED1AQ9H1Q7 454 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 ABCB8Q9NUT2 735 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 PLA2G4CQ9UP65 541 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 PKD1L2Q7Z442 2459 aa17.83■□□□□ 0.44
CLN3-216ENST00000565316 DSPP15924 2871 aaKnown RBP17.83■□□□□ 0.44
CLN3-216ENST00000565316 DMXL2Q8TDJ6 3036 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 FAM221BA6H8Z2 402 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 PPP1R3GB7ZBB8 358 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 H0Y626 953 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 HYAL3O43820 417 aaPredicted RBP17.82■□□□□ 0.44
CLN3-216ENST00000565316 FBXO21O94952 628 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 TRIM16O95361 564 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 LTFP02788 710 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 ACADMP11310 421 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 HLA-EP13747 358 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 BRD2P25440 801 aaKnown RBP17.82■□□□□ 0.44
CLN3-216ENST00000565316 RPL34P49207 117 aaKnown RBP17.82■□□□□ 0.44
CLN3-216ENST00000565316 SGSHP51688 502 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 GCNT1Q02742 428 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 ARID5AQ03989 594 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 CETN1Q12798 172 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 CCDC40Q4G0X9 1142 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 FAM133BQ5BKY9 247 aaKnown RBP17.82■□□□□ 0.44
CLN3-216ENST00000565316 PIK3R6Q5UE93 754 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 DCAF12L1Q5VU92 463 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 NUGGCQ68CJ6 796 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 CHST9Q7L1S5 443 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 UNC45BQ8IWX7 931 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 AHI1Q8N157 1196 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 PPM1KQ8N3J5 372 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 LMLNQ96KR4 655 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 GGA2Q9UJY4 613 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 ZMIZ1Q9ULJ6 1067 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 MSRB2Q9Y3D2 182 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 FAM208BQ5VWN6 2430 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 ZFYVE26Q68DK2 2539 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 SPEGQ15772 3267 aa17.82■□□□□ 0.44
CLN3-216ENST00000565316 M0QYV0 167 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 IRAK2O43187 625 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 SH3BP5O60239 455 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 FYNP06241 537 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 DLDP09622 509 aaKnown RBP17.81■□□□□ 0.44
CLN3-216ENST00000565316 PABPC1P11940 636 aaKnown RBP17.81■□□□□ 0.44
CLN3-216ENST00000565316 SLC11A2P49281 568 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 FNDC3BQ53EP0 1204 aaKnown RBP17.81■□□□□ 0.44
CLN3-216ENST00000565316 MBLAC2Q68D91 279 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 ISM2Q6H9L7 571 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 ZCCHC9Q8N567 271 aaKnown RBP17.81■□□□□ 0.44
CLN3-216ENST00000565316 EHBP1Q8NDI1 1231 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 WFDC5Q8TCV5 224 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 CLEC4CQ8WTT0 213 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 CYB5D2Q8WUJ1 264 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 FBRSQ9HAH7 460 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 CNTN6Q9UQ52 1028 aa17.81■□□□□ 0.44
CLN3-216ENST00000565316 MUC22E2RYF6 1773 aaPredicted RBP17.81■□□□□ 0.44
CLN3-216ENST00000565316 PIK3R2O00459 728 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 BCAT2O15382 392 aaPredicted RBP17.8■□□□□ 0.44
CLN3-216ENST00000565316 ACSL4O60488 711 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 CALCAP01258 141 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 SLC6A4P31645 630 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 TBX4P57082 545 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 BNC1Q01954 994 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 ZBTB16Q05516 673 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 MORC3Q14149 939 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 BECN1Q14457 450 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 ZNF423Q2M1K9 1284 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 RFWD3Q6PCD5 774 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 RRAGAQ7L523 313 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 RAB44Q7Z6P3 723 aaPredicted RBP17.8■□□□□ 0.44
CLN3-216ENST00000565316 ARHGEF19Q8IW93 802 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 TRIM59Q8IWR1 403 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms