RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 AZIN2Q96A70 460 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 FAF2Q96CS3 445 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 PABPC5Q96DU9 382 aaKnown RBP13.26□□□□□ -0.29
CLK3-214ENST00000564096 TCEAL4Q96EI5 215 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 C1orf74Q96LT6 269 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 RUNDC3BQ96NL0 473 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 CSPG4P5Q96PW8 444 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 KLF16Q9BXK1 252 aaPredicted RBP13.26□□□□□ -0.29
CLK3-214ENST00000564096 FRMD8P1Q9BZ68 369 aaPredicted RBP13.26□□□□□ -0.29
CLK3-214ENST00000564096 ADAM7Q9H2U9 754 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 CATSPERBQ9H7T0 1116 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 HOMER3Q9NSC5 361 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 OR12D3Q9UGF7 316 aa13.26□□□□□ -0.29
CLK3-214ENST00000564096 MTCL1Q9Y4B5 1905 aaKnown RBP13.26□□□□□ -0.29
CLK3-214ENST00000564096 ZNF638Q14966 1978 aaKnown RBP13.25□□□□□ -0.29
CLK3-214ENST00000564096 CHD9Q3L8U1 2897 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 ABCB7O75027 752 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 TBX10O75333 385 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 CD48P09326 243 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 TGM2P21980 687 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 MTHFRP42898 656 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 HCAR3P49019 387 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 NTHL1P78549 312 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 SEMA3BQ13214 749 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 TAZQ16635 292 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 ANKRD20A8PQ5CZ79 823 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 RABGAP1LQ5R372 815 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 STXBP5Q5T5C0 1151 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 TTC39BQ5VTQ0 682 aaPredicted RBP13.25□□□□□ -0.29
CLK3-214ENST00000564096 CCDC70Q6NSX1 233 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 BBS12Q6ZW61 710 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 TSC1Q92574 1164 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 LRCH3Q96II8 777 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 MS4A14Q96JA4 679 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 FAM161BQ96MY7 647 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 NECTIN4Q96NY8 510 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 RNF38Q9H0F5 515 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 SIK2Q9H0K1 926 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 GDE1Q9NZC3 331 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 HS3ST4Q9Y661 456 aa13.25□□□□□ -0.29
CLK3-214ENST00000564096 E9PAM4 449 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 APOC4-APOC2K7ER74 178 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ACSL4O60488 711 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 CST8O60676 142 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 MOSPD3O75425 235 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ZNF189O75820 626 aaPredicted RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 LRIG2O94898 1065 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 SLU7O95391 586 aaKnown RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 APOC2P02655 101 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 TCF3P15923 654 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 GOT1P17174 413 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 EPHB2P29323 1055 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 WEE1P30291 646 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 KCNQ1P51787 676 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 DYNLT1P63172 113 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 TUBB4BP68371 445 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ADGRE1Q14246 886 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 COL19A1Q14993 1142 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 CTC1Q2NKJ3 1217 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 MS4A13Q5J8X5 152 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 PIK3R6Q5UE93 754 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 RAP1GAP2Q684P5 730 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 RWDD4Q6NW29 188 aaKnown RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 AADACL2Q6P093 401 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 SYCE2Q6PIF2 218 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 TMCO3Q6UWJ1 677 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 BZW1Q7L1Q6 419 aaKnown RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 DENND1CQ8IV53 801 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 PYROXD2Q8N2H3 581 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ING5Q8WYH8 240 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ZFRQ96KR1 1074 aaKnown RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 RPRD1AQ96P16 312 aaPredicted RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 RNF157Q96PX1 679 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 SLC22A12Q96S37 553 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 APOL5Q9BWW9 433 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 CARD6Q9BX69 1037 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 HEMGNQ9BXL5 484 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 SLC46A2Q9BY10 475 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ANLNQ9NQW6 1124 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 ARHGEF4Q9NR80 690 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 MTMR10Q9NXD2 777 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 CFAP97Q9P2B7 532 aa13.24□□□□□ -0.29
CLK3-214ENST00000564096 PPARGC1AQ9UBK2 798 aaKnown RBP13.24□□□□□ -0.29
CLK3-214ENST00000564096 CHD7Q9P2D1 2997 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 E2F8A0AVK6 867 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 LEFTY2O00292 366 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 MCF2LO15068 1137 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 PHF2O75151 1096 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 KRT10P13645 584 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 TACR2P21452 398 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 HOXC13P31276 330 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 MLLT6P55198 1093 aaPredicted RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 USP4Q13107 963 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 MMRN1Q13201 1228 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 KLF1Q13351 362 aaPredicted RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 AUHQ13825 339 aaKnown RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 DPYSQ14117 519 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 MANEALQ5VSG8 457 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 SLC9A4Q6AI14 798 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 NPAS3Q8IXF0 933 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms