RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 CNGA4Q8IV77 575 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 TERB1Q8NA31 727 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 CCDC26Q8TAB7 109 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 DDI1Q8WTU0 396 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 RXFP2Q8WXD0 754 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 BHMTQ93088 406 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 TMA16Q96EY4 203 aaKnown RBP17.34■□□□□ 0.37
CLK3-207ENST00000562389 TRIM11Q96F44 468 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLK3-207ENST00000562389 ARHGEF38Q9NXL2 777 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 XPO7Q9UIA9 1087 aaKnown RBP17.34■□□□□ 0.37
CLK3-207ENST00000562389 PAXBP1Q9Y5B6 917 aa17.34■□□□□ 0.37
CLK3-207ENST00000562389 K7EQS6 105 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 TSPAN3O60637 253 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 ENDOD1O94919 500 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 CISD3P0C7P0 127 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 MYBL1P10243 752 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 COL9A1P20849 921 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 GPD1P21695 349 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 SDC4P31431 198 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 RFC1P35251 1148 aaPredicted RBP17.33■□□□□ 0.36
CLK3-207ENST00000562389 TNFRSF4P43489 277 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 DGKGP49619 791 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 MTAPQ13126 283 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 MAPK8IP2Q13387 824 aaPredicted RBP17.33■□□□□ 0.36
CLK3-207ENST00000562389 GAS6Q14393 721 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 TSR1Q2NL82 804 aaKnown RBP17.33■□□□□ 0.36
CLK3-207ENST00000562389 CCDC14Q49A88 953 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 MS4A13Q5J8X5 152 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 MPP7Q5T2T1 576 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 PLEKHA7Q6IQ23 1121 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 RFWD3Q6PCD5 774 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 C1orf210Q8IVY1 113 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 SPEM1Q8N4L4 309 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 PRSS33Q8NF86 280 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 PRICKLE1Q96MT3 831 aaPredicted RBP17.33■□□□□ 0.36
CLK3-207ENST00000562389 SLC2A11Q9BYW1 496 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 WDCPQ9H6R7 721 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 SPATA6Q9NWH7 488 aaPredicted RBP17.33■□□□□ 0.36
CLK3-207ENST00000562389 ZNHIT6Q9NWK9 470 aaKnown RBP17.33■□□□□ 0.36
CLK3-207ENST00000562389 SLC27A6Q9Y2P4 619 aa17.33■□□□□ 0.36
CLK3-207ENST00000562389 ATG2BQ96BY7 2078 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 A0A087X0T9 212 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 SSU72P8A0A1W2PR75 194 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 TYW5A2RUC4 315 aaKnown RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 ANKRD62A6NC57 917 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 CHURC1-FNTBB4DL54 471 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 AKR1B15C9JRZ8 316 aaPredicted RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 RNF40O75150 1001 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 FAM228BP0C875 321 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 TACR2P21452 398 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 SGSHP51688 502 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 ADKP55263 362 aaKnown RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 RAP1GAP2Q684P5 730 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 NUDT18Q6ZVK8 323 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 STRADAQ7RTN6 431 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 CHSY1Q86X52 802 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 DNAAF5Q86Y56 855 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 HJURPQ8NCD3 748 aaPredicted RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 CENPIQ92674 756 aaPredicted RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 ZNF653Q96CK0 615 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 MCEEQ96PE7 176 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 PRMT1Q99873 361 aaKnown RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 PRMT8Q9NR22 394 aaPredicted RBP17.32■□□□□ 0.36
CLK3-207ENST00000562389 PARVAQ9NVD7 372 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 NENFQ9UMX5 172 aa17.32■□□□□ 0.36
CLK3-207ENST00000562389 F5H5T6 163 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 TRIM24O15164 1050 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 ATMINO43313 823 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 ATG13O75143 517 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 ADCY5O95622 1261 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 CHRM1P11229 460 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 EIF4A3P38919 411 aaKnown RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 CCR3P51677 355 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 ATXN1P54253 815 aaKnown RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 RPL7AP62424 266 aaKnown RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 ATP11AP98196 1134 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 MAMLD1Q13495 774 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 ANGPT1Q15389 498 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 C15orf59Q2T9L4 293 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 ASTE1Q2TB18 679 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 ACBD5Q5T8D3 534 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 ALKBH5Q6P6C2 394 aaKnown RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 DCUN1D2Q6PH85 259 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 SFTPA1Q8IWL2 248 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 ZNF557Q8N988 423 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 USP33Q8TEY7 942 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 TKTL2Q9H0I9 626 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 CNOT8Q9UFF9 292 aaKnown RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 CLEC4EQ9ULY5 219 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 ARIH1Q9Y4X5 557 aaPredicted RBP17.31■□□□□ 0.36
CLK3-207ENST00000562389 SCINQ9Y6U3 715 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 CACNA1IQ9P0X4 2223 aa17.31■□□□□ 0.36
CLK3-207ENST00000562389 TBC1D3BA6NDS4 549 aa17.3■□□□□ 0.36
CLK3-207ENST00000562389 LAMTOR5O43504 91 aa17.3■□□□□ 0.36
CLK3-207ENST00000562389 TBL1XO60907 577 aa17.3■□□□□ 0.36
CLK3-207ENST00000562389 PAGE1O75459 146 aa17.3■□□□□ 0.36
CLK3-207ENST00000562389 PAPSS2O95340 614 aaPredicted RBP17.3■□□□□ 0.36
CLK3-207ENST00000562389 ZNF143P52747 638 aaPredicted RBP17.3■□□□□ 0.36
CLK3-207ENST00000562389 MRPS21P82921 87 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms