RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PPARGC1AQ9UBK2 798 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 EVLQ9UI08 416 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 TUBD1Q9UJT1 453 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SRPK3Q9UPE1 567 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 COA3Q9Y2R0 106 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 GPR52Q9Y2T5 361 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TMEM98Q9Y2Y6 226 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TELO2Q9Y4R8 837 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TRPV2Q9Y5S1 764 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SLC4A7Q9Y6M7 1214 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 MROH7Q68CQ1 1323 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TCF20Q9UGU0 1960 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 ANKRD11Q6UB99 2663 aaPredicted RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 MYH7BA7E2Y1 1941 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PTPRFP10586 1907 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 A0A1B0GUA9 196 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 ANKRD63C9JTQ0 380 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 M0R3H8 397 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 DNM1LO00429 736 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 SART1O43290 800 aaKnown RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 DGKIO75912 1065 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 WISP1O95388 367 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 EOMESO95936 686 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PGK1P00558 417 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TNNC2P02585 160 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 AMY2AP04746 511 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 P4HA1P13674 534 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 DARSP14868 501 aaKnown RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 ELNP15502 786 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TNNI1P19237 187 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 AMY2BP19961 511 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TNFAIP3P21580 790 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PROZP22891 400 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PTGS1P23219 599 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CCND3P30281 292 aaPredicted RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 ADSSP30520 456 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CASP14P31944 242 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 STAT1P42224 750 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PIK3CBP42338 1070 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 MXI1P50539 228 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 ACLYP53396 1101 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 MFAP3P55082 362 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 BPIFB4P59827 614 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 YWHAEP62258 255 aaKnown RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 MYL7Q01449 175 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 ALDH6A1Q02252 535 aaKnown RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 SRSF11Q05519 484 aaKnown RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 MBTD1Q05BQ5 628 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CYP24A1Q07973 514 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 BFSP2Q13515 415 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 NOLC1Q14978 699 aaKnown RBP eCLIP5.43□□□□□ -1.54
LDLR-209ENST00000558528 C10orf76Q5T2E6 689 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TMEM63BQ5T3F8 832 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 SFMBT2Q5VUG0 894 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 FAAH2Q6GMR7 532 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TIGD7Q6NT04 549 aaPredicted RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 PPP1R2P3Q6NXS1 205 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CXCL17Q6UXB2 119 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 C8orf86Q6ZUL3 223 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 OTOP3Q7RTS5 596 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 WDR49Q8IV35 697 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CAGE1Q8TC20 777 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TRAPPC12Q8WVT3 735 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 EDARADDQ8WWZ3 215 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 RSPH1Q8WYR4 309 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TAF4BQ92750 862 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 EZH1Q92800 747 aaPredicted RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 APIPQ96GX9 242 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 ANKRD36BP1Q96IX9 119 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 C16orf92Q96LL3 132 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CCDC42Q96M95 316 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CBWD1Q9BRT8 395 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 KIFC3Q9BVG8 833 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 STK33Q9BYT3 514 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 TRIM6Q9C030 488 aaPredicted RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.43□□□□□ -1.54
LDLR-209ENST00000558528 KCNH6Q9H252 994 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 ADAMTS10Q9H324 1103 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 SEMA6CQ9H3T2 930 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 IFT122Q9HBG6 1241 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 UBN1Q9NPG3 1134 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 KCND1Q9NSA2 647 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 RAB20Q9NX57 234 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 RBAKQ9NYW8 714 aaPredicted RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 CLIC5Q9NZA1 410 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PLAGL2Q9UPG8 496 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 SIK3Q9Y2K2 1263 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 DERAQ9Y315 318 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 COQ4Q9Y3A0 265 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CFAP20Q9Y6A4 193 aaKnown RBP5.43□□□□□ -1.54
LDLR-209ENST00000558528 ATP23Q9Y6H3 246 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 PARP14Q460N5 1801 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 CNTNAP2Q9UHC6 1331 aa5.43□□□□□ -1.54
LDLR-209ENST00000558528 ZMYM2Q9UBW7 1377 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TTC26A0AVF1 554 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 DYTNA2CJ06 578 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 PRR33A8MZF0 331 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 KRIT1O00522 736 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 MAN2B1O00754 1011 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SCDO00767 359 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms