RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 STT3AP46977 705 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 TGFB2P61812 414 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 RALGDSQ12967 914 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 HSP90AA5PQ58FG0 334 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 METTL25Q8N6Q8 603 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 ZNF669Q96BR6 464 aaPredicted RBP11.65□□□□□ -0.54
LDLR-208ENST00000558518 KCNK16Q96T55 309 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 PCDHAC1Q9H158 963 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 SUDS3Q9H7L9 328 aaPredicted RBP11.65□□□□□ -0.54
LDLR-208ENST00000558518 PHGDHO43175 533 aaKnown RBP11.65□□□□□ -0.55
LDLR-208ENST00000558518 GNL1P36915 607 aaPredicted RBP11.65□□□□□ -0.55
LDLR-208ENST00000558518 RGS2P41220 211 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 SNRPFP62306 86 aaKnown RBP11.65□□□□□ -0.55
LDLR-208ENST00000558518 IRF9Q00978 393 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 KCNJ11Q14654 390 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 NOMO1Q15155 1222 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 C15orf39Q6ZRI6 1047 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 UTS2BQ765I0 119 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 SESTD1Q86VW0 696 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 XYLT1Q86Y38 959 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 PYROXD2Q8N2H3 581 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 TDRD5Q8NAT2 981 aaKnown RBP11.65□□□□□ -0.55
LDLR-208ENST00000558518 KLHL23Q8NBE8 558 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 MAPK15Q8TD08 544 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 NDRG1Q92597 394 aaKnown RBP11.65□□□□□ -0.55
LDLR-208ENST00000558518 ZNF512Q96ME7 567 aaPredicted RBP11.65□□□□□ -0.55
LDLR-208ENST00000558518 WRNIP1Q96S55 665 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 OMDQ99983 421 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 ST6GALNAC4Q9H4F1 302 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 SLC39A10Q9ULF5 831 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 AURKCQ9UQB9 309 aa11.65□□□□□ -0.55
LDLR-208ENST00000558518 ENTPD3O75355 529 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 PABPC4LP0CB38 370 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 MX2P20592 715 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 SDC4P31431 198 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CNTN2Q02246 1040 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 WASHC5Q12768 1159 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 KLF10Q13118 480 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TMEM259Q4ZIN3 620 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TEX44Q53QW1 395 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 XKR3Q5GH77 459 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 PITRM1Q5JRX3 1037 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 LPCAT2Q7L5N7 544 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 FAM131BQ86XD5 332 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 PLD6Q8N2A8 252 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 RNF157Q96PX1 679 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TCF7L2Q9NQB0 619 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TMPRSS4Q9NRS4 437 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 GTSE1Q9NYZ3 720 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 SIRPGQ9P1W8 387 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 DNAJA2O60884 412 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 SERPINE1P05121 402 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TFAP2AP05549 437 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 FAM58BPP0C7Q3 252 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 ADORA2BP29275 332 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 HMGCS2P54868 508 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CAPSQ13938 189 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 SLC9A4Q6AI14 798 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 ATG14Q6ZNE5 492 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 PID1Q7Z2X4 250 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 MAVSQ7Z434 540 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 RTKN2Q8IZC4 609 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 ATP6V1E2Q96A05 226 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TASP1Q9H6P5 420 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 HMX2A2RU54 273 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 SAC3D1A6NKF1 404 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 C9JVG2 144 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 E7ESA3 106 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 PAPSS1O43252 624 aaPredicted RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 MED7O43513 233 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 XPOTO43592 962 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 ALDOAP04075 364 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 PRKCBP05771 671 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 PDGFRBP09619 1106 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 HDCP19113 662 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CYP2F1P24903 491 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 ARRB2P32121 409 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 ABCE1P61221 599 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 CDKL1Q00532 357 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 FSCBQ5H9T9 825 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 BNC2Q6ZN30 1099 aaPredicted RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 FAM183BPQ6ZVS7 135 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 ACOT1Q86TX2 421 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CPNE9Q8IYJ1 553 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CIB1Q99828 191 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 EBNA1BP2Q99848 306 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 PKP2Q99959 881 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 TMEM79Q9BSE2 394 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 SNRNP25Q9BV90 132 aaKnown RBP11.64□□□□□ -0.55
LDLR-208ENST00000558518 USP29Q9HBJ7 922 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 GPAMQ9HCL2 828 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CYP4F12Q9HCS2 524 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 STK32BQ9NY57 414 aa11.64□□□□□ -0.55
LDLR-208ENST00000558518 CITO14578 2027 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 LTFP02788 710 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 NFICP08651 508 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 FGF3P11487 239 aaPredicted RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 PSMC3P17980 439 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 MAGEA10P43363 369 aaPredicted RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 HPCAP84074 193 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms