RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SNRNP25Q9BV90 132 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 DCLK3Q9C098 648 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 DHX35Q9H5Z1 703 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 KIF9Q9HAQ2 790 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 TRPV4Q9HBA0 871 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 ZFP14Q9HCL3 533 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 KLHL11Q9NVR0 708 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 XPO7Q9UIA9 1087 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 AGO1Q9UL18 857 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 AP4E1Q9UPM8 1137 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.96□□□□□ -0.82
CUX1-216ENST00000558469 JRKLQ9Y4A0 524 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 GOLGA6L7A0A1B0GV03 622 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 E2F8A0AVK6 867 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 CCDC66A2RUB6 948 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 HEPACAM2A8MVW5 462 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 MIF4GDA9UHW6 222 aaKnown RBP9.95□□□□□ -0.82
CUX1-216ENST00000558469 C2CD4DB7Z1M9 353 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 ENC1O14682 589 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 ACSL4O60488 711 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 GREM1O60565 184 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 TCF3P15923 654 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 FCARP24071 287 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 CTNNA2P26232 953 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 L1CAMP32004 1257 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 GGCXP38435 758 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 MARCKSL1P49006 195 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 SCAPQ12770 1279 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 USP4Q13107 963 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 RPS6KA1Q15418 735 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 ZNF77Q15935 545 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 CA9Q16790 459 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 PUS10Q3MIT2 529 aaKnown RBP9.95□□□□□ -0.82
CUX1-216ENST00000558469 ODF2Q5BJF6 829 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 PPP6R3Q5H9R7 873 aaPredicted RBP9.95□□□□□ -0.82
CUX1-216ENST00000558469 MS4A13Q5J8X5 152 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 EFHC2Q5JST6 749 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 PIK3R6Q5UE93 754 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 LRRC38Q5VT99 294 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 NADSYN1Q6IA69 706 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 TANGO2Q6ICL3 276 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 PARM1Q6UWI2 310 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 Q6ZNB5 142 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 NYAP1Q6ZVC0 841 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 UBL4BQ8N7F7 174 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 TDRD5Q8NAT2 981 aaKnown RBP9.95□□□□□ -0.82
CUX1-216ENST00000558469 KCTD6Q8NC69 237 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 RIN3Q8TB24 985 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 TEKT4Q8WW24 435 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 KRT35Q92764 455 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 AZIN2Q96A70 460 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 RSPRY1Q96DX4 576 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 HES6Q96HZ4 224 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 RPGRIP1Q96KN7 1286 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 LRRC3BQ96PB8 259 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 HAPLN3Q96S86 360 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 KXD1Q9BQD3 176 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 PHF7Q9BWX1 381 aaPredicted RBP9.95□□□□□ -0.82
CUX1-216ENST00000558469 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.95□□□□□ -0.823e-6■□□□□ 8.8
CUX1-216ENST00000558469 DDX56Q9NY93 547 aaKnown RBP9.95□□□□□ -0.82
CUX1-216ENST00000558469 EPS15L1Q9UBC2 864 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 OR12D3Q9UGF7 316 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 FAM50BQ9Y247 325 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 ZNF510Q9Y2H8 683 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 NR2E1Q9Y466 385 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 PCDHA3Q9Y5H8 950 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 SNX10Q9Y5X0 201 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 HS3ST4Q9Y661 456 aa9.95□□□□□ -0.82
CUX1-216ENST00000558469 COL6A3P12111 3177 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 SHROOM3Q8TF72 1996 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 LRRD1A4D1F6 860 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 ESPNB1AK53 854 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 PI4K2BG5E9Z4 385 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 FAM72CH0Y354 149 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 DDX3YO15523 660 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 CREB3O43889 395 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 TSPAN3O60637 253 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 SRGAP2O75044 1071 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 LATS1O95835 1130 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 KRT1P04264 644 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 ATP1A1P05023 1023 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 IL9P15248 144 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 TACR2P21452 398 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 SLC6A4P31645 630 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 PEX5P50542 639 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 MLLT6P55198 1093 aaPredicted RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 CDH6P55285 790 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 RWDD2BP57060 319 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 ETF1P62495 437 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 MTA1Q13330 715 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 AUHQ13825 339 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 KRT81Q14533 505 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 FAM133BQ5BKY9 247 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 ADGRF1Q5T601 910 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 FAM72AQ5TYM5 149 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 RAP1GAP2Q684P5 730 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 FAM72DQ6L9T8 149 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 RFWD3Q6PCD5 774 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 VITQ6UXI7 678 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 SYT10Q6XYQ8 523 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms