RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 BAP1Q92560 729 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 C18orf8Q96DM3 657 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 RAB6CQ9H0N0 254 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 SEMA4AQ9H3S1 761 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 FAM204AQ9H8W3 233 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 TMPRSS4Q9NRS4 437 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 ASNSD1Q9NWL6 643 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 CACNA2D2Q9NY47 1150 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC27A6Q9Y2P4 619 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 SNX10Q9Y5X0 201 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 RAD54BQ9Y620 910 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 CEP250Q9BV73 2442 aa12.03□□□□□ -0.48
CCDC88C-208ENST00000554165 A0A1B0GTH6 734 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 A0A1W2PQF6 199 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 KCNU1A8MYU2 1149 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 I6L893 689 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 DAB1O75553 588 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 LSM8O95777 96 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 LATS1O95835 1130 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 GLI1P08151 1106 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 CD70P32970 193 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 FLT3P36888 993 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 IRAK1P51617 712 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 ATXN1P54253 815 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 FANCCQ00597 558 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 NNTQ13423 1086 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 SIM2Q14190 667 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 NR1I3Q14994 352 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 FAM102AQ5T9C2 384 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 RAP1GAP2Q684P5 730 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 KBTBD6Q86V97 674 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 CIR1Q86X95 450 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 DNAAF5Q86Y56 855 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 CHPFQ8IZ52 775 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 LGI2Q8N0V4 545 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 CAMKK1Q8N5S9 505 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 EMC1Q8N766 993 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 FRMD1Q8N878 549 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF397Q8NF99 534 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 MDGA1Q8NFP4 955 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 HMGB4Q8WW32 186 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 RLN3Q8WXF3 142 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 C11orf70Q9BRQ4 267 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 SLC6A17Q9H1V8 727 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 CD248Q9HCU0 757 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 ANLNQ9NQW6 1124 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 PIGVQ9NUD9 493 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 ABCB8Q9NUT2 735 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 STARD13Q9Y3M8 1113 aa12.02□□□□□ -0.49
CCDC88C-208ENST00000554165 SPAG17Q6Q759 2223 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 TCRBV21S2A2A0A5A6 115 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 M0QYT0 321 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 RPP40O75818 363 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 SERPINC1P01008 464 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 APOEP02649 317 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 TACR2P21452 398 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 MMP8P22894 467 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 NTSR1P30989 418 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 NOS2P35228 1153 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 MATKP42679 507 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 PTP4A2Q12974 167 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 FSCBQ5H9T9 825 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 MS4A13Q5J8X5 152 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 EOGTQ5NDL2 527 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 RNF43Q68DV7 783 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 CEP68Q76N32 757 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 CACNA2D4Q7Z3S7 1137 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 IRF2BP2Q7Z5L9 587 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 ADIPOR2Q86V24 386 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 CHSY1Q86X52 802 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 FAM160A2Q8N612 972 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 CYB5D2Q8WUJ1 264 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 GAB3Q8WWW8 586 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 RNF34Q969K3 372 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 AZIN2Q96A70 460 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 LMLNQ96KR4 655 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 TBCBQ99426 244 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 NPY6RQ99463 290 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 TRIM62Q9BVG3 475 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 CIPCQ9C0C6 399 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 ELOVL2Q9NXB9 296 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 TMEM59LQ9UK28 342 aa12.01□□□□□ -0.49
CCDC88C-208ENST00000554165 LRRC53A6NM62 1247 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 ADCY5O95622 1261 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 UNGP13051 313 aaPredicted RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 HOXB2P14652 356 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 GABRG2P18507 467 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 BCKDHBP21953 392 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 IL12RB1P42701 662 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 SULT1E1P49888 294 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 SNX16P57768 344 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CENPCQ03188 943 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CCDC6Q16204 474 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CLEC16AQ2KHT3 1053 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 FUT11Q495W5 492 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 PREPLQ4J6C6 727 aaPredicted RBP12□□□□□ -0.49
CCDC88C-208ENST00000554165 FILIP1LQ4L180 1135 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 SH3PXD2AQ5TCZ1 1133 aa12□□□□□ -0.49
CCDC88C-208ENST00000554165 CHST9Q7L1S5 443 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms