RNA–Protein interactions for RNA: ENST00000553981.1

SLIRP-202, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-202ENST00000553981 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 DENND3A2RUS2 1198 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ADAM12O43184 909 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 MTSS1O43312 755 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PRC1O43663 620 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CYP17A1P05093 508 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 EDN1P05305 212 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SPATA31D3P0C874 917 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 TDGF1P13385 188 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 DARSP14868 501 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 HOXB8P17481 243 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 RPL17P18621 184 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 LAG3P18627 525 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NCLP19338 710 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CD72P21854 359 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PTX3P26022 381 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SMARCA1P28370 1054 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 HOXA11P31270 313 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SREBF1P36956 1147 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ATXN1P54253 815 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 EXOSC10Q01780 885 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 DMWDQ09019 674 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SMC1AQ14683 1233 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NECTIN1Q15223 517 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CEP55Q53EZ4 464 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CCDC178Q5BJE1 867 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SPECC1Q5M775 1068 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 EFCAB12Q6NXP0 572 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ZCCHC8Q6NZY4 707 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 XRRA1Q6P2D8 792 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 TSSK4Q6SA08 328 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PARM1Q6UWI2 310 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CD300LGQ6UXG3 332 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SPATA31D4Q6ZUB0 917 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 APBB1IPQ7Z5R6 666 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 DDX53Q86TM3 631 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 RSPH3Q86UC2 560 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PLA2G4DQ86XP0 818 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 UBALD2Q8IYN6 164 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NME8Q8N427 588 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SLC44A3Q8N4M1 653 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 TDRD5Q8NAT2 981 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 FANCBQ8NB91 859 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NCOA7Q8NI08 942 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CPT1CQ8TCG5 803 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NTN5Q8WTR8 489 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NELL1Q92832 810 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 FGF14Q92915 247 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ZNF764Q96H86 408 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ZNF558Q96NG5 402 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 MAP3K14Q99558 947 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PAAF1Q9BRP4 392 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 FDXACB1Q9BRP7 624 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PITHD1Q9GZP4 211 aaPredicted RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 UNC45AQ9H3U1 944 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 CHMP4BQ9H444 224 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ZNF768Q9H5H4 540 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 IFT122Q9HBG6 1241 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 NCOA5Q9HCD5 579 aaKnown RBP3.54□□□□□ -1.84
SLIRP-202ENST00000553981 RIC8AQ9NPQ8 531 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 ZNF302Q9NR11 478 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 C1orf112Q9NSG2 853 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 DIAPH3Q9NSV4 1193 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 C2orf42Q9NWW7 574 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SPG21Q9NZD8 308 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 SAMD15Q9P1V8 674 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 PTGFRNQ9P2B2 879 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 GABBR1Q9UBS5 961 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 FAM186AA6NE01 2351 aa3.54□□□□□ -1.84
SLIRP-202ENST00000553981 COL1A2P08123 1366 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 A0A087WWV3 80 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 A0A0A6YYJ9 748 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 A0A0A6YYK5 440 aaPredicted RBP3.53□□□□□ -1.84
SLIRP-202ENST00000553981 CCDC195A0A1B0GUA6 201 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 SMCO2A6NFE2 343 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 ZAR1LA6NP61 321 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 ANHXE9PGG2 379 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 NRP1O14786 923 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 TRIM24O15164 1050 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 MSH4O15457 936 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 TEX28O15482 410 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 MAFGO15525 162 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 B3GALT2O43825 422 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 ZC3H11AO75152 810 aaKnown RBP eCLIP3.53□□□□□ -1.84
SLIRP-202ENST00000553981 SCAF4O95104 1147 aaKnown RBP3.53□□□□□ -1.84
SLIRP-202ENST00000553981 CYP3A4P08684 503 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 MTHFRP42898 656 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 PTTG1IPP53801 180 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 GPC5P78333 572 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 MRPS21P82921 87 aaKnown RBP3.53□□□□□ -1.84
SLIRP-202ENST00000553981 ITIH3Q06033 890 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 TDGQ13569 410 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 HTR4Q13639 388 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 EPHA7Q15375 998 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 LETM2Q2VYF4 491 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 FAM214AQ32MH5 1076 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 TIGD2Q4W5G0 525 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 EARS2Q5JPH6 523 aaKnown RBP3.53□□□□□ -1.84
SLIRP-202ENST00000553981 ZNF484Q5JVG2 852 aa3.53□□□□□ -1.84
SLIRP-202ENST00000553981 HECTD2Q5U5R9 776 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms