RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HNRNPABQ99729 332 aaKnown RBP13.52□□□□□ -0.25
VPS29-211ENST00000553128 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS29-211ENST00000553128 AASDHPPTQ9NRN7 309 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 PCDHA5Q9Y5H7 936 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.51□□□□□ -0.25
VPS29-211ENST00000553128 LRRIQ3A6PVS8 624 aaPredicted RBP13.51□□□□□ -0.25
VPS29-211ENST00000553128 C10orf142B7Z368 130 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 C4BPAP04003 597 aaKnown RBP13.51□□□□□ -0.25
VPS29-211ENST00000553128 CYBBP04839 570 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 MPOP05164 745 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 CKMT2P17540 419 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 CD38P28907 300 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 STAT6P42226 847 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 SGSHP51688 502 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 TMPRSS3P57727 454 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 COG7P83436 770 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 ZBTB16Q05516 673 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 CCDC186Q7Z3E2 898 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 FAM217AQ8IXS0 508 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 CPXM2Q8N436 756 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 ZNF276Q8N554 614 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 WFDC5Q8TCV5 224 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 SLC2A11Q9BYW1 496 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 DCLK3Q9C098 648 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 PABPC3Q9H361 631 aaKnown RBP13.51□□□□□ -0.25
VPS29-211ENST00000553128 ABCB8Q9NUT2 735 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 CLIC5Q9NZA1 410 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 PLA2G4CQ9UP65 541 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 SRPRBQ9Y5M8 271 aaKnown RBP13.51□□□□□ -0.25
VPS29-211ENST00000553128 USP3Q9Y6I4 520 aa13.51□□□□□ -0.25
VPS29-211ENST00000553128 SLC12A8A0AV02 714 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 EIF3DO15371 548 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS29-211ENST00000553128 CD2BP2O95400 341 aaKnown RBP13.5□□□□□ -0.25
VPS29-211ENST00000553128 MT-CO3P00414 261 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 RALAP11233 206 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 ASPAP45381 313 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 PCBP4P57723 403 aaKnown RBP13.5□□□□□ -0.25
VPS29-211ENST00000553128 NXPH1P58417 271 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 EHHADHQ08426 723 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 TTC31Q49AM3 519 aaPredicted RBP13.5□□□□□ -0.25
VPS29-211ENST00000553128 ZNF776Q68DI1 518 aaPredicted RBP13.5□□□□□ -0.25
VPS29-211ENST00000553128 CCDC73Q6ZRK6 1079 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 BRAPQ7Z569 592 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 KIAA0907Q7Z7F0 614 aaPredicted RBP13.5□□□□□ -0.25
VPS29-211ENST00000553128 SPATS2Q86XZ4 545 aaKnown RBP13.5□□□□□ -0.25
VPS29-211ENST00000553128 CACTIN-AS1Q8N1I8 211 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 PDILTQ8N807 584 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 GANCQ8TET4 914 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 MYO19Q96H55 970 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 TMX3Q96JJ7 454 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 NEUROG2Q9H2A3 272 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 CAAP1Q9H8G2 361 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 GDF3Q9NR23 364 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 FBXL12Q9NXK8 326 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 MARCH2Q9P0N8 246 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 GGA2Q9UJY4 613 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 PIEZO2Q9H5I5 2752 aa13.5□□□□□ -0.25
VPS29-211ENST00000553128 A0A1W2PP55 124 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 TRIM38O00635 465 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 MID1O15344 667 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 SDC3O75056 442 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 KIF20AO95235 890 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 TXLNAP40222 546 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 PSEN1P49768 467 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 DLG4P78352 724 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 CEBPZQ03701 1054 aaKnown RBP13.49□□□□□ -0.25
VPS29-211ENST00000553128 ILKQ13418 452 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 E2F5Q15329 346 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 PROX2Q3B8N5 592 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 KIAA1614Q5VZ46 1190 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 MBLAC2Q68D91 279 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 FAM173BQ6P4H8 233 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 STXBP4Q6ZWJ1 553 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 TADA2BQ86TJ2 420 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 PARD3BQ8TEW8 1205 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 CYFIP2Q96F07 1278 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 TRIM4Q9C037 500 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 RSPH9Q9H1X1 276 aaPredicted RBP13.49□□□□□ -0.25
VPS29-211ENST00000553128 PNPLA8Q9NP80 782 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 ADAMTS1Q9UHI8 967 aa13.49□□□□□ -0.25
VPS29-211ENST00000553128 ARID1BQ8NFD5 2236 aaPredicted RBP13.49□□□□□ -0.25
VPS29-211ENST00000553128 PTPN13Q12923 2485 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 UBR5O95071 2799 aaPredicted RBP13.48□□□□□ -0.25
VPS29-211ENST00000553128 TLR4O00206 839 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 YKT6O15498 198 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 KLK10O43240 276 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 SIN3BO75182 1162 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 DLDP09622 509 aaKnown RBP13.48□□□□□ -0.25
VPS29-211ENST00000553128 PABPC1P11940 636 aaKnown RBP13.48□□□□□ -0.25
VPS29-211ENST00000553128 ACP1P24666 158 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 CD70P32970 193 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 ARRB1P49407 418 aaPredicted RBP13.48□□□□□ -0.25
VPS29-211ENST00000553128 MPPE1Q53F39 396 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 BROXQ5VW32 411 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 USP30Q70CQ3 517 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 UNC93AQ86WB7 457 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 DHX40Q8IX18 779 aaKnown RBP13.48□□□□□ -0.25
VPS29-211ENST00000553128 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS29-211ENST00000553128 WFIKKN2Q8TEU8 576 aa13.48□□□□□ -0.25
VPS29-211ENST00000553128 NDRG1Q92597 394 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms