RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZCCHC23Q6ZST2 131 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ADHFE1Q8IWW8 467 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 DENND6BQ8NEG7 585 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PJA1Q8NG27 643 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ZNF669Q96BR6 464 aaPredicted RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 FAM120BQ96EK7 910 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 GFM1Q96RP9 751 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 PHF23Q9BUL5 403 aaPredicted RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 SLC25A23Q9BV35 468 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PCDH10Q9P2E7 1040 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 SCAF8Q9UPN6 1271 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 MDM4O15151 490 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 GJA9P57773 515 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 STXBP2Q15833 593 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CTC1Q2NKJ3 1217 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 DPP8Q6V1X1 898 aaPredicted RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 CLNKQ7Z7G1 428 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ZBTB33Q86T24 672 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ALYREFQ86V81 257 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 GOLM1Q8NBJ4 401 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PTCD3Q96EY7 689 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 MSTO1Q9BUK6 570 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 YIPF2Q9BWQ6 316 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 TDRD1Q9BXT4 1180 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 TRIM54Q9BYV2 358 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 RMND5AQ9H871 391 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 SLCO1B3Q9NPD5 702 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 FANCD2Q9BXW9 1451 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 TYW5A2RUC4 315 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 J3QRK9 145 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 EXTL3O43909 919 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 EDF1O60869 148 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 STX11O75558 287 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 VDRP11473 427 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ETS1P14921 441 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 FMO5P49326 533 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 RPS7P62081 194 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 TFDP1Q14186 410 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 MTX3Q5HYI7 312 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ZNF667Q5HYK9 610 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 LCN1P1Q5VSP4 162 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CASP12Q6UXS9 341 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 SLC22A16Q86VW1 577 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CHSY1Q86X52 802 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 POF1BQ8WVV4 589 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 FBXL8Q96CD0 374 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PHF20Q9BVI0 1012 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PNPLA8Q9NP80 782 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 FBXO6Q9NRD1 293 aaPredicted RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 NDFIP2Q9NV92 336 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 NCKIPSDQ9NZQ3 722 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CD274Q9NZQ7 290 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ENOPH1Q9UHY7 261 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 GMPPBQ9Y5P6 360 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ERBB3P21860 1342 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ZMYM2Q9UBW7 1377 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PLD2O14939 933 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 RGL2O15211 777 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 UGT2B4P06133 528 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CDKAL1Q5VV42 579 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 STRA8Q7Z7C7 330 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 SCFD2Q8WU76 684 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CHURC1Q8WUH1 139 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PPP1R10Q96QC0 940 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 AMNQ9BXJ7 453 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ARMC7Q9H6L4 198 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CCDC167Q9P0B6 97 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 AFF4Q9UHB7 1163 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 NEDD4P46934 1319 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 GRIN2BQ13224 1484 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 TOR1BO14657 336 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PSMD3O43242 534 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 TPPPO94811 219 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 GRIK1P39086 918 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 DLG1Q12959 904 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ACVR2BQ13705 512 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 MPP2Q14168 576 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PDK1Q15118 436 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 GALNTL6Q49A17 601 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 AGAP9Q5VTM2 703 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PPP2R2DQ66LE6 453 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PTF1AQ7RTS3 328 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 ZNF677Q86XU0 584 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 VANGL1Q8TAA9 524 aaPredicted RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 PLEKHO2Q8TD55 490 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CEP170P1Q96L14 293 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 MCEEQ96PE7 176 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 LY9Q9HBG7 655 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 EIF3KQ9UBQ5 218 aaKnown RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 GPN3Q9UHW5 284 aaPredicted RBP8.95□□□□□ -0.98
YBX3-208ENST00000540447 WASF2Q9Y6W5 498 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 C3orf70A6NLC5 250 aaPredicted RBP8.94□□□□□ -0.98
YBX3-208ENST00000540447 H0Y858 1186 aa8.94□□□□□ -0.98
YBX3-208ENST00000540447 M0QYV0 167 aa8.94□□□□□ -0.98
YBX3-208ENST00000540447 ZW10O43264 779 aa8.94□□□□□ -0.98
YBX3-208ENST00000540447 SORBS3O60504 671 aa8.94□□□□□ -0.98
YBX3-208ENST00000540447 PGK2P07205 417 aa8.94□□□□□ -0.98
YBX3-208ENST00000540447 C6orf222P0C671 652 aaPredicted RBP8.94□□□□□ -0.98
YBX3-208ENST00000540447 NR4A1P22736 598 aa8.94□□□□□ -0.98
YBX3-208ENST00000540447 AVPR1AP37288 418 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms